X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FAppJmolBinding.java;fp=src%2Fjalview%2Fgui%2FAppJmolBinding.java;h=df62eabe1b33c15475b192dd86e03c4784e883d6;hb=7ef02aa7c7559f3a37f2f0524243c52b00335294;hp=63813a9696d66bd31167b6c7682620568371836c;hpb=e015538903c8cabb2b90dd030e3e0c419a730db9;p=jalview.git

diff --git a/src/jalview/gui/AppJmolBinding.java b/src/jalview/gui/AppJmolBinding.java
index 63813a9..df62eab 100644
--- a/src/jalview/gui/AppJmolBinding.java
+++ b/src/jalview/gui/AppJmolBinding.java
@@ -61,13 +61,12 @@ public class AppJmolBinding extends jalview.ext.jmol.JalviewJmolBinding
     AlignmentPanel ap = (alignment==null) ? appJmolWindow.ap : (AlignmentPanel) alignment;
     if (ap.av.showSequenceFeatures)
     {
-      if (fr == null)
+      if (fr==null)
       {
-        fr = new FeatureRenderer(ap);
+        fr=ap.cloneFeatureRenderer();
+      } else {
+        ap.updateFeatureRenderer(fr);
       }
-
-      fr.transferSettings(ap.
-              seqPanel.seqCanvas.getFeatureRenderer());
     }
 
     return fr;