X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FAppJmolBinding.java;h=42a2f7450e7d8573034b6c48f74f4a7a7f9d3592;hb=7b39c1ea0410b4cc8410b69b2d008ed0af3b6cb5;hp=35abb945ef828e5e4ccce5bf381f16d04f2b09ea;hpb=e1cd94839128776e14e51ded3f3be2dcc7e72273;p=jalview.git

diff --git a/src/jalview/gui/AppJmolBinding.java b/src/jalview/gui/AppJmolBinding.java
index 35abb94..42a2f74 100644
--- a/src/jalview/gui/AppJmolBinding.java
+++ b/src/jalview/gui/AppJmolBinding.java
@@ -58,7 +58,7 @@ public class AppJmolBinding extends jalview.ext.jmol.JalviewJmolBinding
   {
     AlignmentPanel ap = (alignment == null) ? appJmolWindow.ap
             : (AlignmentPanel) alignment;
-    if (ap.av.showSequenceFeatures)
+    if (ap.av.isShowSequenceFeatures())
     {
       if (fr == null)
       {
@@ -133,7 +133,7 @@ public class AppJmolBinding extends jalview.ext.jmol.JalviewJmolBinding
       return;
     if (!isLoadingFromArchive())
     {
-      colourBySequence(ap.av.getShowSequenceFeatures(), ap);
+      colourBySequence(ap.av.isShowSequenceFeatures(), ap);
     }
   }