X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FAppVarna.java;h=5c3785a3d6b050bec34250482770efd615f54aaa;hb=6e79eb7f3978f7e4ab11b7e2aa334a6e9b739996;hp=4fe9ac2139d4a41bf3446fa6e735cd22dd60683e;hpb=7ab5d6b0ba5fec1ea4a4239e79c476d841622485;p=jalview.git

diff --git a/src/jalview/gui/AppVarna.java b/src/jalview/gui/AppVarna.java
index 4fe9ac2..5c3785a 100644
--- a/src/jalview/gui/AppVarna.java
+++ b/src/jalview/gui/AppVarna.java
@@ -1,6 +1,6 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
- * Copyright (C) 2014 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
@@ -20,17 +20,6 @@
  */
 package jalview.gui;
 
-import jalview.bin.Cache;
-import jalview.datamodel.ColumnSelection;
-import jalview.datamodel.SequenceGroup;
-import jalview.datamodel.SequenceI;
-import jalview.structure.SecondaryStructureListener;
-import jalview.structure.SelectionListener;
-import jalview.structure.SelectionSource;
-import jalview.structure.StructureSelectionManager;
-import jalview.structure.VamsasSource;
-import jalview.util.ShiftList;
-
 import java.awt.BorderLayout;
 import java.awt.Color;
 import java.util.ArrayList;
@@ -41,10 +30,8 @@ import java.util.regex.Pattern;
 
 import javax.swing.JInternalFrame;
 import javax.swing.JSplitPane;
-
-import jalview.bin.Cache;
-import jalview.util.MessageManager;
-import jalview.util.ShiftList;
+import javax.swing.event.InternalFrameAdapter;
+import javax.swing.event.InternalFrameEvent;
 
 import fr.orsay.lri.varna.VARNAPanel;
 import fr.orsay.lri.varna.exceptions.ExceptionFileFormatOrSyntax;
@@ -57,6 +44,18 @@ import fr.orsay.lri.varna.models.annotations.HighlightRegionAnnotation;
 import fr.orsay.lri.varna.models.rna.ModeleBase;
 import fr.orsay.lri.varna.models.rna.RNA;
 
+import jalview.bin.Cache;
+import jalview.datamodel.ColumnSelection;
+import jalview.datamodel.SequenceGroup;
+import jalview.datamodel.SequenceI;
+import jalview.structure.SecondaryStructureListener;
+import jalview.structure.SelectionListener;
+import jalview.structure.SelectionSource;
+import jalview.structure.StructureSelectionManager;
+import jalview.structure.VamsasSource;
+import jalview.util.MessageManager;
+import jalview.util.ShiftList;
+
 public class AppVarna extends JInternalFrame implements
         InterfaceVARNAListener, SelectionListener,
         SecondaryStructureListener// implements
@@ -134,6 +133,15 @@ public class AppVarna extends JInternalFrame implements
     // System.out.println(ssm.toString());
     ssm.addStructureViewerListener(this);
     ssm.addSelectionListener(this);
+    addInternalFrameListener(new InternalFrameAdapter()
+    {
+      @Override
+      public void internalFrameClosed(InternalFrameEvent evt)
+      {
+        close();
+      }
+    });
+
   }
 
   public void initVarna()
@@ -447,4 +455,19 @@ public class AppVarna extends JInternalFrame implements
 
   }
 
+  /**
+   * Tidy up as necessary when the viewer panel is closed
+   */
+  protected void close()
+  {
+    /*
+     * Deregister as a listener, to free references to this object
+     */
+    if (ssm != null)
+    {
+      ssm.removeStructureViewerListener(AppVarna.this, null);
+      ssm.removeSelectionListener(AppVarna.this);
+    }
+  }
+
 }