X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FAppVarnaBinding.java;h=787ed538664149153316150bf6afda264ff0a47e;hb=72fb6df14f1ff426bbafa18dcc9a90450da93018;hp=ee4ef797679b034e96475ebb3234c9823849c194;hpb=3d0101179759ef157b088ea135423cd909512d9f;p=jalview.git

diff --git a/src/jalview/gui/AppVarnaBinding.java b/src/jalview/gui/AppVarnaBinding.java
index ee4ef79..787ed53 100644
--- a/src/jalview/gui/AppVarnaBinding.java
+++ b/src/jalview/gui/AppVarnaBinding.java
@@ -72,7 +72,7 @@ public class AppVarnaBinding extends JalviewVarnaBinding
 
   private ReorderableJList _sideList = null;
 
-  private static String errorOpt = "error";
+  private final static String errorOpt = "error";
 
   @SuppressWarnings("unused")
   private boolean _error;
@@ -100,7 +100,7 @@ public class AppVarnaBinding extends JalviewVarnaBinding
    */
   private void init()
   {
-    DefaultListModel<FullBackup> dlm = new DefaultListModel<FullBackup>();
+    DefaultListModel<FullBackup> dlm = new DefaultListModel<>();
 
     int marginTools = 40;
 
@@ -122,6 +122,7 @@ public class AppVarnaBinding extends JalviewVarnaBinding
     _sideList.setPreferredSize(new Dimension(100, 0));
     _sideList.addListSelectionListener(new ListSelectionListener()
     {
+      @Override
       public void valueChanged(ListSelectionEvent evt)
       {
         changeSelectedStructure_actionPerformed(evt);
@@ -289,7 +290,8 @@ public class AppVarnaBinding extends JalviewVarnaBinding
                         name += " (Model " + mn++ + ")";
                       }
                       _rnaList.add(varnaPanel.getConfig().clone(), r, name,
-                              true);
+                              true); 
+                      // BH 2018 SwingJS clone of varnaPanel or its config will be the object itself, not a clone
                     }
                   }
                 }
@@ -315,7 +317,7 @@ public class AppVarnaBinding extends JalviewVarnaBinding
   {
     private DefaultListModel<FullBackup> _rnalist;
 
-    private List<RNA> _rnas = new ArrayList<RNA>();
+    private List<RNA> _rnas = new ArrayList<>();
 
     JList _l;
 
@@ -545,7 +547,7 @@ public class AppVarnaBinding extends JalviewVarnaBinding
    */
   public void addStructure(RNA rna)
   {
-    VARNAConfig config = vp.getConfig().clone();
+    VARNAConfig config = vp.getConfig().clone(); // BH 2018 this will NOT be a clone in SwingJS
     addStructure(rna, config);
   }