X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FAppVarnaBinding.java;h=7894ee20f5dcf8501c1d2048171757cc041f3df8;hb=2b0142bf85bf5b3d20612c01433e7ce29b633ec4;hp=822f81c057de1327f9873d4c646c4a3f9d791783;hpb=ad15cff29620f960119f80176f1fd443da9f6763;p=jalview.git

diff --git a/src/jalview/gui/AppVarnaBinding.java b/src/jalview/gui/AppVarnaBinding.java
index 822f81c..7894ee2 100644
--- a/src/jalview/gui/AppVarnaBinding.java
+++ b/src/jalview/gui/AppVarnaBinding.java
@@ -20,6 +20,7 @@
  */
 package jalview.gui;
 
+import jalview.structure.AtomSpec;
 import jalview.util.MessageManager;
 
 import java.awt.BorderLayout;
@@ -827,8 +828,6 @@ public class AppVarnaBinding extends jalview.ext.varna.JalviewVarnaBinding
 
   public void onWarningEmitted(String s)
   {
-    // TODO Auto-generated method stub
-
   }
 
   public void mouseClicked(MouseEvent e)
@@ -852,127 +851,73 @@ public class AppVarnaBinding extends jalview.ext.varna.JalviewVarnaBinding
 
   public void mouseEntered(MouseEvent arg0)
   {
-    // TODO Auto-generated method stub
-
   }
 
   public void mouseExited(MouseEvent arg0)
   {
-    // TODO Auto-generated method stub
-
   }
 
   public void mousePressed(MouseEvent arg0)
   {
-    // TODO Auto-generated method stub
-
   }
 
   public void mouseReleased(MouseEvent arg0)
   {
-    // TODO Auto-generated method stub
-
-  }
-
-  @Override
-  public Color getColour(int atomIndex, int pdbResNum, String chain,
-          String pdbId)
-  {
-    // TODO Auto-generated method stub
-    return null;
   }
 
   @Override
   public String[] getPdbFile()
   {
-    // TODO Auto-generated method stub
     return null;
   }
 
   @Override
-  public void highlightAtom(int atomIndex, int pdbResNum, String chain,
-          String pdbId)
-  {
-    // TODO Auto-generated method stub
-
-  }
-
-  @Override
-  public void mouseOverStructure(int atomIndex, String strInfo)
-  {
-    // TODO Auto-generated method stub
-
-  }
-
-  @Override
   public void releaseReferences(Object svl)
   {
-    // TODO Auto-generated method stub
-
   }
 
   @Override
   public void updateColours(Object source)
   {
-    // TODO Auto-generated method stub
-
   }
 
   @Override
   public void componentHidden(ComponentEvent e)
   {
-    // TODO Auto-generated method stub
-
   }
 
   @Override
   public void componentMoved(ComponentEvent e)
   {
-    // TODO Auto-generated method stub
-
   }
 
   @Override
   public void componentResized(ComponentEvent e)
   {
-    // TODO Auto-generated method stub
-
   }
 
   @Override
   public void componentShown(ComponentEvent e)
   {
-    // TODO Auto-generated method stub
-
   }
 
   @Override
   public void onStructureRedrawn()
   {
-    // TODO Auto-generated method stub
-
   }
 
   @Override
   public void onZoomLevelChanged()
   {
-    // TODO Auto-generated method stub
-
   }
 
   @Override
   public void onTranslationChanged()
   {
-    // TODO Auto-generated method stub
+  }
 
+  @Override
+  public void highlightAtoms(List<AtomSpec> atoms)
+  {
   }
 }
-
-/*
- * public static void main(String[] args) { JTextField str = new
- * JTextField("ATGC");
- * 
- * AppVarnaBinding vab = new AppVarnaBinding(); vab.varnagui.set_seq(str);
- * vab.varnagui.setDefaultCloseOperation(JFrame.EXIT_ON_CLOSE);
- * vab.varnagui.pack(); vab.varnagui.setVisible(true); } }
- */