X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FAppVarnaBinding.java;h=9ba1d3d901cc308303d9b5e565736282c26baadf;hb=ab43013b7e357b84b4abade0dba949668dfb2a0e;hp=1b95afbacbfb1e9e2129b74529985f2154eb3472;hpb=28787d9646cca5dd77190930f59b7ff32cf995b4;p=jalview.git diff --git a/src/jalview/gui/AppVarnaBinding.java b/src/jalview/gui/AppVarnaBinding.java index 1b95afb..9ba1d3d 100644 --- a/src/jalview/gui/AppVarnaBinding.java +++ b/src/jalview/gui/AppVarnaBinding.java @@ -1,22 +1,27 @@ /* - * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8) - * Copyright (C) 2012 J Procter, AM Waterhouse, LM Lui, J Engelhardt, G Barton, M Clamp, S Searle + * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1) + * Copyright (C) 2014 The Jalview Authors * * This file is part of Jalview. * * Jalview is free software: you can redistribute it and/or * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. + * as published by the Free Software Foundation, either version 3 + * of the License, or (at your option) any later version. * * Jalview is distributed in the hope that it will be useful, but * WITHOUT ANY WARRANTY; without even the implied warranty * of MERCHANTABILITY or FITNESS FOR A PARTICULAR * PURPOSE. See the GNU General Public License for more details. * - * You should have received a copy of the GNU General Public License along with Jalview. If not, see . + * You should have received a copy of the GNU General Public License + * along with Jalview. If not, see . + * The Jalview Authors are detailed in the 'AUTHORS' file. */ package jalview.gui; +import jalview.util.MessageManager; + import java.awt.BorderLayout; import java.awt.Color; import java.awt.Component; @@ -43,20 +48,14 @@ import java.util.List; import javax.swing.DefaultListModel; import javax.swing.DefaultListSelectionModel; -import javax.swing.Icon; import javax.swing.JButton; -import javax.swing.JFrame; import javax.swing.JLabel; import javax.swing.JList; -import javax.swing.JOptionPane; import javax.swing.JPanel; import javax.swing.JScrollPane; -import javax.swing.JSplitPane; import javax.swing.JTextField; import javax.swing.ListModel; import javax.swing.ListSelectionModel; -import javax.swing.UIManager; -import javax.swing.UnsupportedLookAndFeelException; import javax.swing.event.ListSelectionEvent; import javax.swing.event.ListSelectionListener; @@ -104,17 +103,23 @@ public class AppVarnaBinding extends jalview.ext.varna.JalviewVarnaBinding private JTextField _seq = new JTextField(); - private JLabel _strLabel = new JLabel(" Str:"); + private JLabel _strLabel = new JLabel( + MessageManager.getString("label.str")); - private JLabel _seqLabel = new JLabel(" Seq:"); + private JLabel _seqLabel = new JLabel( + MessageManager.getString("label.seq")); - private JButton _createButton = new JButton("Create"); + private JButton _createButton = new JButton( + MessageManager.getString("action.create")); - private JButton _updateButton = new JButton("Update"); + private JButton _updateButton = new JButton( + MessageManager.getString("action.update")); - private JButton _deleteButton = new JButton("Delete"); + private JButton _deleteButton = new JButton( + MessageManager.getString("action.delete")); - private JButton _duplicateButton = new JButton("Snapshot"); + private JButton _duplicateButton = new JButton( + MessageManager.getString("action.snapshot")); protected JPanel _listPanel = new JPanel(); @@ -146,7 +151,7 @@ public class AppVarnaBinding extends jalview.ext.varna.JalviewVarnaBinding { // super("VARNA in Jalview"); initVarna(seq, struc); - + } public AppVarnaBinding(ArrayList rnaList) @@ -158,7 +163,7 @@ public class AppVarnaBinding extends jalview.ext.varna.JalviewVarnaBinding private void initVarna(String seq, String str) { - + DefaultListModel dlm = new DefaultListModel(); DefaultListSelectionModel m = new DefaultListSelectionModel(); @@ -191,7 +196,7 @@ public class AppVarnaBinding extends jalview.ext.varna.JalviewVarnaBinding try { - + vp = new VARNAPanel("0", "."); _RNA1.setRNA(seq, str); _RNA1.drawRNARadiate(vp.getConfig()); @@ -220,7 +225,7 @@ public class AppVarnaBinding extends jalview.ext.varna.JalviewVarnaBinding private void initVarnaEdit(ArrayList rnaInList) { - + DefaultListModel dlm = new DefaultListModel(); int marginTools = 40; @@ -244,7 +249,7 @@ public class AppVarnaBinding extends jalview.ext.varna.JalviewVarnaBinding FullBackup sel = (FullBackup) _sideList.getSelectedValue(); Mapping map = Mapping.DefaultOutermostMapping(vp.getRNA() .getSize(), sel.rna.getSize()); - //vp.showRNAInterpolated(sel.rna, sel.config, map); + // vp.showRNAInterpolated(sel.rna, sel.config, map); vp.showRNA(sel.rna, sel.config); // _seq.setText(sel.rna.getSeq()); _str.setText(sel.rna.getStructDBN()); @@ -255,12 +260,12 @@ public class AppVarnaBinding extends jalview.ext.varna.JalviewVarnaBinding try { - + vp = new VARNAPanel("0", "."); for (int i = 0; i < rnaInList.size(); i++) { rnaInList.get(i).drawRNARadiate(vp.getConfig()); - + } } catch (ExceptionNonEqualLength e) { @@ -347,7 +352,9 @@ public class AppVarnaBinding extends jalview.ext.varna.JalviewVarnaBinding ops.add(_deleteButton); ops.add(_duplicateButton); - JLabel j = new JLabel("Structures Manager", JLabel.CENTER); + JLabel j = new JLabel( + MessageManager.getString("label.structures_manager"), + JLabel.CENTER); _listPanel.setLayout(new BorderLayout()); // _listPanel.add(ops, BorderLayout.SOUTH); @@ -810,10 +817,11 @@ public class AppVarnaBinding extends jalview.ext.varna.JalviewVarnaBinding public void onUINewStructure(VARNAConfig v, RNA r) { // patch to fix infinite loop - // The problem is that onUINewStructure is called when user clicks + // The problem is that onUINewStructure is called when user clicks // check with Yann about whether Jalview should do anything with this event. - // e.g. if user has used VARNA's menu to import a structure .. Jalview may need to be told which structure is displayed. - + // e.g. if user has used VARNA's menu to import a structure .. Jalview may + // need to be told which structure is displayed. + // _rnaList.add(v, r, "", true); } @@ -944,6 +952,20 @@ public class AppVarnaBinding extends jalview.ext.varna.JalviewVarnaBinding // TODO Auto-generated method stub } + + @Override + public void onZoomLevelChanged() + { + // TODO Auto-generated method stub + + } + + @Override + public void onTranslationChanged() + { + // TODO Auto-generated method stub + + } } /*