X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FAppVarnaBinding.java;h=a738a2c760edda661d8a2ba1be3e7ed055783551;hb=9d139ca8d1af8f0f2d78193d418ae9e9168a3e8a;hp=61c44c2f13bf40f2f8e3484357525fc22bc489b2;hpb=e54608848d1b11338d6ef287385ad818606bff16;p=jalview.git diff --git a/src/jalview/gui/AppVarnaBinding.java b/src/jalview/gui/AppVarnaBinding.java index 61c44c2..a738a2c 100644 --- a/src/jalview/gui/AppVarnaBinding.java +++ b/src/jalview/gui/AppVarnaBinding.java @@ -1,22 +1,27 @@ /* - * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8) - * Copyright (C) 2012 J Procter, AM Waterhouse, LM Lui, J Engelhardt, G Barton, M Clamp, S Searle + * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2) + * Copyright (C) 2014 The Jalview Authors * * This file is part of Jalview. * * Jalview is free software: you can redistribute it and/or * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. + * as published by the Free Software Foundation, either version 3 + * of the License, or (at your option) any later version. * * Jalview is distributed in the hope that it will be useful, but * WITHOUT ANY WARRANTY; without even the implied warranty * of MERCHANTABILITY or FITNESS FOR A PARTICULAR * PURPOSE. See the GNU General Public License for more details. * - * You should have received a copy of the GNU General Public License along with Jalview. If not, see . + * You should have received a copy of the GNU General Public License + * along with Jalview. If not, see . + * The Jalview Authors are detailed in the 'AUTHORS' file. */ package jalview.gui; +import jalview.util.MessageManager; + import java.awt.BorderLayout; import java.awt.Color; import java.awt.Component; @@ -98,17 +103,23 @@ public class AppVarnaBinding extends jalview.ext.varna.JalviewVarnaBinding private JTextField _seq = new JTextField(); - private JLabel _strLabel = new JLabel(" Str:"); + private JLabel _strLabel = new JLabel( + MessageManager.getString("label.str")); - private JLabel _seqLabel = new JLabel(" Seq:"); + private JLabel _seqLabel = new JLabel( + MessageManager.getString("label.seq")); - private JButton _createButton = new JButton("Create"); + private JButton _createButton = new JButton( + MessageManager.getString("action.create")); - private JButton _updateButton = new JButton("Update"); + private JButton _updateButton = new JButton( + MessageManager.getString("action.update")); - private JButton _deleteButton = new JButton("Delete"); + private JButton _deleteButton = new JButton( + MessageManager.getString("action.delete")); - private JButton _duplicateButton = new JButton("Snapshot"); + private JButton _duplicateButton = new JButton( + MessageManager.getString("action.snapshot")); protected JPanel _listPanel = new JPanel(); @@ -140,7 +151,7 @@ public class AppVarnaBinding extends jalview.ext.varna.JalviewVarnaBinding { // super("VARNA in Jalview"); initVarna(seq, struc); - + } public AppVarnaBinding(ArrayList rnaList) @@ -152,7 +163,7 @@ public class AppVarnaBinding extends jalview.ext.varna.JalviewVarnaBinding private void initVarna(String seq, String str) { - + DefaultListModel dlm = new DefaultListModel(); DefaultListSelectionModel m = new DefaultListSelectionModel(); @@ -185,7 +196,7 @@ public class AppVarnaBinding extends jalview.ext.varna.JalviewVarnaBinding try { - + vp = new VARNAPanel("0", "."); _RNA1.setRNA(seq, str); _RNA1.drawRNARadiate(vp.getConfig()); @@ -214,7 +225,7 @@ public class AppVarnaBinding extends jalview.ext.varna.JalviewVarnaBinding private void initVarnaEdit(ArrayList rnaInList) { - + DefaultListModel dlm = new DefaultListModel(); int marginTools = 40; @@ -238,7 +249,7 @@ public class AppVarnaBinding extends jalview.ext.varna.JalviewVarnaBinding FullBackup sel = (FullBackup) _sideList.getSelectedValue(); Mapping map = Mapping.DefaultOutermostMapping(vp.getRNA() .getSize(), sel.rna.getSize()); - //vp.showRNAInterpolated(sel.rna, sel.config, map); + // vp.showRNAInterpolated(sel.rna, sel.config, map); vp.showRNA(sel.rna, sel.config); // _seq.setText(sel.rna.getSeq()); _str.setText(sel.rna.getStructDBN()); @@ -249,12 +260,12 @@ public class AppVarnaBinding extends jalview.ext.varna.JalviewVarnaBinding try { - + vp = new VARNAPanel("0", "."); for (int i = 0; i < rnaInList.size(); i++) { rnaInList.get(i).drawRNARadiate(vp.getConfig()); - + } } catch (ExceptionNonEqualLength e) { @@ -341,7 +352,9 @@ public class AppVarnaBinding extends jalview.ext.varna.JalviewVarnaBinding ops.add(_deleteButton); ops.add(_duplicateButton); - JLabel j = new JLabel("Structures Manager", JLabel.CENTER); + JLabel j = new JLabel( + MessageManager.getString("label.structures_manager"), + JLabel.CENTER); _listPanel.setLayout(new BorderLayout()); // _listPanel.add(ops, BorderLayout.SOUTH); @@ -804,10 +817,11 @@ public class AppVarnaBinding extends jalview.ext.varna.JalviewVarnaBinding public void onUINewStructure(VARNAConfig v, RNA r) { // patch to fix infinite loop - // The problem is that onUINewStructure is called when user clicks + // The problem is that onUINewStructure is called when user clicks // check with Yann about whether Jalview should do anything with this event. - // e.g. if user has used VARNA's menu to import a structure .. Jalview may need to be told which structure is displayed. - + // e.g. if user has used VARNA's menu to import a structure .. Jalview may + // need to be told which structure is displayed. + // _rnaList.add(v, r, "", true); } @@ -943,14 +957,14 @@ public class AppVarnaBinding extends jalview.ext.varna.JalviewVarnaBinding public void onZoomLevelChanged() { // TODO Auto-generated method stub - + } @Override public void onTranslationChanged() { // TODO Auto-generated method stub - + } }