X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FAssociatePdbFileWithSeq.java;h=c9951f54ed60cc74ca9921e5e52c04a7c9242f4c;hb=6081884ff7c5a50b2a9f6615f7a864bdc5699bf2;hp=fd89c503eac593533f0f48b2b0e970c90cd65ce8;hpb=7e3a6674abdd31bf48e7e249a74eff50fd2ce589;p=jalview.git

diff --git a/src/jalview/gui/AssociatePdbFileWithSeq.java b/src/jalview/gui/AssociatePdbFileWithSeq.java
index fd89c50..c9951f5 100644
--- a/src/jalview/gui/AssociatePdbFileWithSeq.java
+++ b/src/jalview/gui/AssociatePdbFileWithSeq.java
@@ -49,19 +49,20 @@ public class AssociatePdbFileWithSeq
           StructureSelectionManagerProvider ssmp)
   {
     return associatePdbWithSeq(choice, file, sequence, prompt, ssmp,
-            TFType.DEFAULT, null);
+            TFType.DEFAULT, null, true);
   }
 
   public PDBEntry associatePdbWithSeq(String choice, DataSourceType file,
           SequenceI sequence, boolean prompt,
           StructureSelectionManagerProvider ssmp, TFType tft,
-          String paeFilename)
+          String paeFilename, boolean doXferSettings)
   {
     PDBEntry entry = new PDBEntry();
     StructureFile pdbfile = StructureSelectionManager
             .getStructureSelectionManager(ssmp)
             .setMapping(false, new SequenceI[]
-            { sequence }, null, choice, file, tft, paeFilename);
+            { sequence }, null, choice, file, tft, paeFilename,
+                    doXferSettings);
     if (pdbfile == null)
     {
       // stacktrace already thrown so just return
@@ -100,6 +101,10 @@ public class AssociatePdbFileWithSeq
               .registerPDBEntry(entry);
       entry.setStructureFile(pdbfile);
     }
+    if (tft != null)
+      entry.setProperty("TFType", tft.name());
+    if (paeFilename != null)
+      entry.setProperty("PAEFile", paeFilename);
     return entry;
   }
 }