X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FChimeraViewFrame.java;h=f13e151daa3c997cd8427b7cb94f62d95b1ee96e;hb=1ef93cb2817f75699773f049b8d25e5b509c2830;hp=3a17ea35bfeaa69b3551be289b53ce99988d936a;hpb=b7cd96eaeb85474ee2ddec1de92181a3b88ceece;p=jalview.git

diff --git a/src/jalview/gui/ChimeraViewFrame.java b/src/jalview/gui/ChimeraViewFrame.java
index 3a17ea3..f13e151 100644
--- a/src/jalview/gui/ChimeraViewFrame.java
+++ b/src/jalview/gui/ChimeraViewFrame.java
@@ -73,10 +73,11 @@ public class ChimeraViewFrame extends StructureViewerBase
 
   private int myHeight = 150;
 
-  private JMenuItem writeFeatures=null;
+  private JMenuItem writeFeatures = null;
 
-  private JMenu fetchAttributes=null;
-/**
+  private JMenu fetchAttributes = null;
+
+  /**
    * Initialise menu options.
    */
   @Override
@@ -89,8 +90,8 @@ public class ChimeraViewFrame extends StructureViewerBase
 
     writeFeatures = new JMenuItem(
             MessageManager.getString("label.create_viewer_attributes"));
-    writeFeatures.setToolTipText(MessageManager
-            .getString("label.create_viewer_attributes_tip"));
+    writeFeatures.setToolTipText(
+            MessageManager.getString("label.create_viewer_attributes_tip"));
     writeFeatures.addActionListener(new ActionListener()
     {
       @Override
@@ -101,10 +102,10 @@ public class ChimeraViewFrame extends StructureViewerBase
     });
     viewerActionMenu.add(writeFeatures);
 
-    fetchAttributes = new JMenu(
-            MessageManager.formatMessage("label.fetch_viewer_attributes",getViewerName()));
-    fetchAttributes.setToolTipText(
-            MessageManager.formatMessage("label.fetch_viewer_attributes_tip",getViewerName()));
+    fetchAttributes = new JMenu(MessageManager.formatMessage(
+            "label.fetch_viewer_attributes", getViewerName()));
+    fetchAttributes.setToolTipText(MessageManager.formatMessage(
+            "label.fetch_viewer_attributes_tip", getViewerName()));
     fetchAttributes.addMouseListener(new MouseAdapter()
     {
 
@@ -116,6 +117,7 @@ public class ChimeraViewFrame extends StructureViewerBase
     });
     viewerActionMenu.add(fetchAttributes);
   }
+
   @Override
   protected void buildActionMenu()
   {
@@ -123,8 +125,9 @@ public class ChimeraViewFrame extends StructureViewerBase
     // add these back in after menu is refreshed
     viewerActionMenu.add(writeFeatures);
     viewerActionMenu.add(fetchAttributes);
-    
+
   };
+
   /**
    * Query the structure viewer for its residue attribute names and add them as
    * items off the attributes menu
@@ -163,8 +166,8 @@ public class ChimeraViewFrame extends StructureViewerBase
   {
     // todo pull up?
     int count = jmb.sendFeaturesToViewer(getAlignmentPanel());
-    statusBar.setText(
-            MessageManager.formatMessage("label.attributes_set", count, getViewerName()));
+    statusBar.setText(MessageManager.formatMessage("label.attributes_set",
+            count, getViewerName()));
   }
 
   /**
@@ -291,8 +294,7 @@ public class ChimeraViewFrame extends StructureViewerBase
    * @param ap
    */
   public ChimeraViewFrame(PDBEntry[] pe, boolean alignAdded,
-          SequenceI[][] seqs,
-          AlignmentPanel ap)
+          SequenceI[][] seqs, AlignmentPanel ap)
   {
     this();
     setAlignAddedStructures(alignAdded);
@@ -341,7 +343,7 @@ public class ChimeraViewFrame extends StructureViewerBase
       boolean opened = jmb.openSession(chimeraSessionFile);
       if (!opened)
       {
-        System.err.println("An error occurred opening Chimera session file "
+        jalview.bin.Console.errPrintln("An error occurred opening Chimera session file "
                 + chimeraSessionFile);
       }
     }