X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FChimeraViewFrame.java;h=fd84b37a5194dd31685df542908c986692e8ed59;hb=9811278f9e18ee6cb88470dbae98da046734a0af;hp=d07a7c27e42fdc5fd537f532d87505a48a74655b;hpb=e1562ea181702ad96f60daedb78e0ea032e787f6;p=jalview.git

diff --git a/src/jalview/gui/ChimeraViewFrame.java b/src/jalview/gui/ChimeraViewFrame.java
index d07a7c2..fd84b37 100644
--- a/src/jalview/gui/ChimeraViewFrame.java
+++ b/src/jalview/gui/ChimeraViewFrame.java
@@ -20,6 +20,7 @@
  */
 package jalview.gui;
 
+import jalview.api.AlignmentViewPanel;
 import jalview.api.FeatureRenderer;
 import jalview.bin.Cache;
 import jalview.datamodel.AlignmentI;
@@ -480,7 +481,7 @@ public class ChimeraViewFrame extends StructureViewerBase
         {
           filePDB.add(thePdbEntry);
           filePDBpos.add(Integer.valueOf(pi));
-          files.append(" \"" + Platform.escapeString(file) + "\"");
+          files.append(" \"" + Platform.escapeBackslashes(file) + "\"");
         }
       }
     } catch (OutOfMemoryError oomerror)
@@ -584,9 +585,9 @@ public class ChimeraViewFrame extends StructureViewerBase
       }
 
       // refresh the sequence colours for the new structure(s)
-      for (AlignmentPanel ap : _colourwith)
+      for (AlignmentViewPanel avp : _colourwith)
       {
-        jmb.updateColours(ap);
+        jmb.updateColours(avp);
       }
       // do superposition if asked to
       if (alignAddedStructures)
@@ -834,10 +835,8 @@ public class ChimeraViewFrame extends StructureViewerBase
   protected String alignStructs_withAllAlignPanels()
   {
     String reply = super.alignStructs_withAllAlignPanels();
-    if (reply != null)
-    {
-      statusBar.setText("Superposition failed: " + reply);
-    }
+    statusBar.setText(
+            reply == null ? " " : "Superposition failed: " + reply);
     return reply;
   }