X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FCrossRefAction.java;h=f607686d543abd592f0b191b8d7b017e065a4e2a;hb=b690e55cf50b5d253ec5545ee21cd93fc381f8c1;hp=2d20ad98c3fd6d6471f96ecd0b112f6458fce137;hpb=f6a84063f10ea1ae9898310c541961cd1d53dd8a;p=jalview.git

diff --git a/src/jalview/gui/CrossRefAction.java b/src/jalview/gui/CrossRefAction.java
index 2d20ad9..f607686 100644
--- a/src/jalview/gui/CrossRefAction.java
+++ b/src/jalview/gui/CrossRefAction.java
@@ -141,7 +141,7 @@ public class CrossRefAction implements Runnable
        */
       AlignFrame newFrame = new AlignFrame(xrefsAlignment,
               AlignFrame.DEFAULT_WIDTH, AlignFrame.DEFAULT_HEIGHT);
-      if (Cache.getDefault("HIDE_INTRONS", true))
+      if (Cache.getDefault(Preferences.HIDE_INTRONS, true))
       {
         newFrame.hideFeatureColumns(SequenceOntologyI.EXON, false);
       }
@@ -440,7 +440,7 @@ public class CrossRefAction implements Runnable
      * register any new mappings for sequence mouseover etc
      * (will not duplicate any previously registered mappings)
      */
-    Desktop.getInstance().getStructureSelectionManager()
+    Desktop.getStructureSelectionManager()
             .registerMappings(dataset.getCodonFrames());
 
     if (copyAlignment.getHeight() <= 0)