X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FCutAndPasteTransfer.java;h=112d502d9abb2335cbece27b241f1229f947cf74;hb=fa9da54fb97cb2eacb1af7859024d90166bddb8f;hp=142dd757c55d46960316c781b2af225fa0d4be41;hpb=7534e6f358b2bba0db179cb2f496bd2e5a4da43d;p=jalview.git

diff --git a/src/jalview/gui/CutAndPasteTransfer.java b/src/jalview/gui/CutAndPasteTransfer.java
index 142dd75..112d502 100644
--- a/src/jalview/gui/CutAndPasteTransfer.java
+++ b/src/jalview/gui/CutAndPasteTransfer.java
@@ -20,6 +20,7 @@
  */
 package jalview.gui;
 
+import jalview.bin.Cache;
 import jalview.api.AlignViewportI;
 import jalview.api.AlignmentViewPanel;
 import jalview.api.ComplexAlignFile;
@@ -138,7 +139,7 @@ public class CutAndPasteTransfer extends GCutAndPasteTransfer
     // TODO: JAL-3048 JalviewFileChooser - Save option
 
     JalviewFileChooser chooser = new JalviewFileChooser(
-            jalview.bin.Cache.getProperty("LAST_DIRECTORY"));
+            Cache.getProperty("LAST_DIRECTORY"));
 
     chooser.setAcceptAllFileFilterUsed(false);
     chooser.setFileView(new JalviewFileView());
@@ -274,11 +275,8 @@ public class CutAndPasteTransfer extends GCutAndPasteTransfer
        */
       if (viewport != null && viewport.getAlignment() != null)
       {
-        if (proxyColourScheme != null)
-        {
-          viewport.applyFeaturesStyle(proxyColourScheme);
-        }
         ((AlignViewport) viewport).addAlignment(al, title);
+        viewport.applyFeaturesStyle(proxyColourScheme);
       }
       else
       {
@@ -301,8 +299,8 @@ public class CutAndPasteTransfer extends GCutAndPasteTransfer
           af.getViewport().setShowSequenceFeatures(showSeqFeatures);
           af.getViewport().setFeaturesDisplayed(fd);
           af.setMenusForViewport();
-          ColourSchemeI cs = ColourSchemeMapper.getJalviewColourScheme(
-                  colourSchemeName, al);
+          ColourSchemeI cs = ColourSchemeMapper
+                  .getJalviewColourScheme(colourSchemeName, al);
           if (cs != null)
           {
             af.changeColour(cs);
@@ -324,13 +322,12 @@ public class CutAndPasteTransfer extends GCutAndPasteTransfer
         af.currentFileFormat = format;
         Desktop.addInternalFrame(af, title, AlignFrame.DEFAULT_WIDTH,
                 AlignFrame.DEFAULT_HEIGHT);
-        af.statusBar.setText(MessageManager
+        af.setStatus(MessageManager
                 .getString("label.successfully_pasted_alignment_file"));
 
         try
         {
-          af.setMaximum(
-                  jalview.bin.Cache.getDefault("SHOW_FULLSCREEN", false));
+          af.setMaximum(Cache.getDefault("SHOW_FULLSCREEN", false));
         } catch (Exception ex)
         {
         }