X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FCutAndPasteTransfer.java;h=12f9e283a1a8516f57a15cdec2590f00297414a2;hb=2959d102cb701ba58489e7222cd101d0eb02ead6;hp=db6fb186c78d941e3901f2ff9a9a7f5884a8b859;hpb=f24dacb1da56fccf05d684e2f4899facec2aecf7;p=jalview.git

diff --git a/src/jalview/gui/CutAndPasteTransfer.java b/src/jalview/gui/CutAndPasteTransfer.java
index db6fb18..12f9e28 100755
--- a/src/jalview/gui/CutAndPasteTransfer.java
+++ b/src/jalview/gui/CutAndPasteTransfer.java
@@ -39,19 +39,25 @@ import javax.swing.*;
  */
 public class CutAndPasteTransfer extends GCutAndPasteTransfer
 {
+
+  public CutAndPasteTransfer()
+  {
+    SwingUtilities.invokeLater(new Runnable()
+    {
+      public void run()
+      {
+        textarea.requestFocus();
+      }
+    });
+
+  }
+
     /**
      * DOCUMENT ME!
      */
     public void setForInput()
     {
         getContentPane().add(inputButtonPanel, java.awt.BorderLayout.SOUTH);
-          SwingUtilities.invokeLater(new Runnable()
-          {
-            public void run()
-            {
-              textarea.requestFocus();
-            }
-          });
     }
 
     /**
@@ -74,6 +80,11 @@ public class CutAndPasteTransfer extends GCutAndPasteTransfer
         textarea.setText(text);
     }
 
+    public void appendText(String text)
+    {
+      textarea.append(text);
+    }
+
     /**
      * DOCUMENT ME!
      *
@@ -81,8 +92,9 @@ public class CutAndPasteTransfer extends GCutAndPasteTransfer
      */
     public void copyItem_actionPerformed(ActionEvent e)
     {
+        textarea.getSelectedText();
         Clipboard c = Toolkit.getDefaultToolkit().getSystemClipboard();
-        c.setContents(new StringSelection(textarea.getText()), null);
+        c.setContents(new StringSelection(textarea.getSelectedText()), null);
     }
 
     /**
@@ -117,12 +129,20 @@ public class CutAndPasteTransfer extends GCutAndPasteTransfer
      */
     public void ok_actionPerformed(ActionEvent e)
     {
-        String format = IdentifyFile.Identify(getText(), "Paste");
+        String format = new IdentifyFile().Identify(getText(), "Paste");
         SequenceI[] sequences = null;
 
         if (FormatAdapter.formats.contains(format))
         {
+          try{
             sequences = new FormatAdapter().readFile(getText(), "Paste", format);
+          }catch(java.io.IOException ex)
+          {
+            JOptionPane.showInternalMessageDialog(Desktop.desktop,
+                                                  "Couldn't read the pasted text.\n" +ex.toString(),
+                                                  "Error parsing text",
+                                                  JOptionPane.WARNING_MESSAGE);
+          }
         }
 
         if (sequences != null)
@@ -149,14 +169,6 @@ public class CutAndPasteTransfer extends GCutAndPasteTransfer
             {
             }
         }
-        else
-        {
-            JOptionPane.showInternalMessageDialog(Desktop.desktop,
-                "Couldn't read the pasted text.\n" +
-                "Formats currently supported are\n" +
-                "Fasta, MSF, Clustal, BLC, PIR, MSP, and PFAM",
-                "Error parsing text", JOptionPane.WARNING_MESSAGE);
-        }
     }
 
     /**