X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FCutAndPasteTransfer.java;h=38a920ab4c694b94bf78c23f40cc8bd11764b76a;hb=797df64fa2a0a30773d0f48f5494d4155e5a8be3;hp=12f9e283a1a8516f57a15cdec2590f00297414a2;hpb=39fe02a01137354d94b28fdbfc128b3d4ca2d6f6;p=jalview.git diff --git a/src/jalview/gui/CutAndPasteTransfer.java b/src/jalview/gui/CutAndPasteTransfer.java index 12f9e28..38a920a 100755 --- a/src/jalview/gui/CutAndPasteTransfer.java +++ b/src/jalview/gui/CutAndPasteTransfer.java @@ -1,216 +1,260 @@ -/* - * Jalview - A Sequence Alignment Editor and Viewer - * Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle - * - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 - * of the License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU General Public License for more details. - * - * You should have received a copy of the GNU General Public License - * along with this program; if not, write to the Free Software - * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA - */ -package jalview.gui; - -import jalview.datamodel.*; - -import jalview.io.*; - -import jalview.jbgui.*; - -import java.awt.*; -import java.awt.datatransfer.*; -import java.awt.event.*; - -import javax.swing.*; - - -/** - * DOCUMENT ME! - * - * @author $author$ - * @version $Revision$ - */ -public class CutAndPasteTransfer extends GCutAndPasteTransfer -{ - - public CutAndPasteTransfer() - { - SwingUtilities.invokeLater(new Runnable() - { - public void run() - { - textarea.requestFocus(); - } - }); - - } - - /** - * DOCUMENT ME! - */ - public void setForInput() - { - getContentPane().add(inputButtonPanel, java.awt.BorderLayout.SOUTH); - } - - /** - * DOCUMENT ME! - * - * @return DOCUMENT ME! - */ - public String getText() - { - return textarea.getText(); - } - - /** - * DOCUMENT ME! - * - * @param text DOCUMENT ME! - */ - public void setText(String text) - { - textarea.setText(text); - } - - public void appendText(String text) - { - textarea.append(text); - } - - /** - * DOCUMENT ME! - * - * @param e DOCUMENT ME! - */ - public void copyItem_actionPerformed(ActionEvent e) - { - textarea.getSelectedText(); - Clipboard c = Toolkit.getDefaultToolkit().getSystemClipboard(); - c.setContents(new StringSelection(textarea.getSelectedText()), null); - } - - /** - * DOCUMENT ME! - * - * @param e DOCUMENT ME! - */ - public void pasteMenu_actionPerformed(ActionEvent e) - { - Clipboard c = Toolkit.getDefaultToolkit().getSystemClipboard(); - Transferable contents = c.getContents(this); - - if (contents == null) - { - return; - } - - try - { - textarea.append((String) contents.getTransferData( - DataFlavor.stringFlavor)); - } - catch (Exception ex) - { - } - } - - /** - * DOCUMENT ME! - * - * @param e DOCUMENT ME! - */ - public void ok_actionPerformed(ActionEvent e) - { - String format = new IdentifyFile().Identify(getText(), "Paste"); - SequenceI[] sequences = null; - - if (FormatAdapter.formats.contains(format)) - { - try{ - sequences = new FormatAdapter().readFile(getText(), "Paste", format); - }catch(java.io.IOException ex) - { - JOptionPane.showInternalMessageDialog(Desktop.desktop, - "Couldn't read the pasted text.\n" +ex.toString(), - "Error parsing text", - JOptionPane.WARNING_MESSAGE); - } - } - - if (sequences != null) - { - AlignFrame af = new AlignFrame(new Alignment(sequences)); - af.currentFileFormat = format; - Desktop.addInternalFrame(af, "Cut & Paste input - " + format, - AlignFrame.NEW_WINDOW_WIDTH, AlignFrame.NEW_WINDOW_HEIGHT); - af.statusBar.setText("Successfully pasted alignment file"); - - try - { - af.setMaximum( jalview.bin.Cache.getDefault("SHOW_FULLSCREEN", false)); - } - catch (Exception ex) - { - } - - try - { - this.setClosed(true); - } - catch (Exception ex) - { - } - } - } - - /** - * DOCUMENT ME! - * - * @param e DOCUMENT ME! - */ - public void cancel_actionPerformed(ActionEvent e) - { - try - { - this.setClosed(true); - } - catch (Exception ex) - { - } - } - - public void textarea_mousePressed(MouseEvent e) - { - if(SwingUtilities.isRightMouseButton(e)) - { - JPopupMenu popup = new JPopupMenu("Edit"); - JMenuItem item = new JMenuItem("Copy"); - item.addActionListener(new ActionListener() - {public void actionPerformed(ActionEvent e) - { - copyItem_actionPerformed(e); - } - }); - popup.add(item); - item = new JMenuItem("Paste"); - item.addActionListener(new ActionListener() - {public void actionPerformed(ActionEvent e) - { - pasteMenu_actionPerformed(e); - } - }); - popup.add(item); - popup.show(this, e.getX(), e.getY()+textarea.getY()+30); - - } - } - -} +/* + * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7) + * Copyright (C) 2011 J Procter, AM Waterhouse, J Engelhardt, LM Lui, G Barton, M Clamp, S Searle + * + * This file is part of Jalview. + * + * Jalview is free software: you can redistribute it and/or + * modify it under the terms of the GNU General Public License + * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. + * + * Jalview is distributed in the hope that it will be useful, but + * WITHOUT ANY WARRANTY; without even the implied warranty + * of MERCHANTABILITY or FITNESS FOR A PARTICULAR + * PURPOSE. See the GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public License along with Jalview. If not, see . + */ +package jalview.gui; + +import java.awt.*; +import java.awt.datatransfer.*; +import java.awt.event.*; +import javax.swing.*; + +import jalview.datamodel.*; +import jalview.io.*; +import jalview.jbgui.*; + +/** + * DOCUMENT ME! + * + * @author $author$ + * @version $Revision$ + */ +public class CutAndPasteTransfer extends GCutAndPasteTransfer +{ + + AlignViewport viewport; + + public CutAndPasteTransfer() + { + SwingUtilities.invokeLater(new Runnable() + { + public void run() + { + textarea.requestFocus(); + } + }); + + } + + /** + * DOCUMENT ME! + */ + public void setForInput(AlignViewport viewport) + { + this.viewport = viewport; + if (viewport != null) + { + ok.setText("Add"); + } + + getContentPane().add(inputButtonPanel, java.awt.BorderLayout.SOUTH); + } + + /** + * DOCUMENT ME! + * + * @return DOCUMENT ME! + */ + public String getText() + { + return textarea.getText(); + } + + /** + * DOCUMENT ME! + * + * @param text + * DOCUMENT ME! + */ + public void setText(String text) + { + textarea.setText(text); + } + + public void appendText(String text) + { + textarea.append(text); + } + + public void save_actionPerformed(ActionEvent e) + { + JalviewFileChooser chooser = new JalviewFileChooser( + jalview.bin.Cache.getProperty("LAST_DIRECTORY")); + + chooser.setAcceptAllFileFilterUsed(false); + chooser.setFileView(new JalviewFileView()); + chooser.setDialogTitle("Save Text to File"); + chooser.setToolTipText("Save"); + + int value = chooser.showSaveDialog(this); + + if (value == JalviewFileChooser.APPROVE_OPTION) + { + try + { + java.io.PrintWriter out = new java.io.PrintWriter( + new java.io.FileWriter(chooser.getSelectedFile())); + + out.print(getText()); + out.close(); + } catch (Exception ex) + { + ex.printStackTrace(); + } + + } + } + + /** + * DOCUMENT ME! + * + * @param e + * DOCUMENT ME! + */ + public void copyItem_actionPerformed(ActionEvent e) + { + textarea.getSelectedText(); + Clipboard c = Toolkit.getDefaultToolkit().getSystemClipboard(); + c.setContents(new StringSelection(textarea.getSelectedText()), null); + } + + /** + * DOCUMENT ME! + * + * @param e + * DOCUMENT ME! + */ + public void pasteMenu_actionPerformed(ActionEvent e) + { + Clipboard c = Toolkit.getDefaultToolkit().getSystemClipboard(); + Transferable contents = c.getContents(this); + + if (contents == null) + { + return; + } + + try + { + textarea.append((String) contents + .getTransferData(DataFlavor.stringFlavor)); + } catch (Exception ex) + { + } + } + + /** + * DOCUMENT ME! + * + * @param e + * DOCUMENT ME! + */ + public void ok_actionPerformed(ActionEvent e) + { + String format = new IdentifyFile().Identify(getText(), "Paste"); + // TODO: identify feature, annotation or tree file and parse appropriately. + Alignment al = null; + + if (FormatAdapter.isValidFormat(format)) + { + try + { + al = new FormatAdapter().readFile(getText(), "Paste", format); + } catch (java.io.IOException ex) + { + JOptionPane.showInternalMessageDialog(Desktop.desktop, + "Couldn't read the pasted text.\n" + ex.toString(), + "Error parsing text", JOptionPane.WARNING_MESSAGE); + } + } + + if (al != null) + { + if (viewport != null) + { + for (int i = 0; i < al.getHeight(); i++) + { + viewport.getAlignment().addSequence(al.getSequenceAt(i)); + } + + viewport.firePropertyChange("alignment", null, viewport + .getAlignment().getSequences()); + } + else + { + AlignFrame af = new AlignFrame(al, AlignFrame.DEFAULT_WIDTH, + AlignFrame.DEFAULT_HEIGHT); + af.currentFileFormat = format; + Desktop.addInternalFrame(af, "Cut & Paste input - " + format, + AlignFrame.DEFAULT_WIDTH, AlignFrame.DEFAULT_HEIGHT); + af.statusBar.setText("Successfully pasted alignment file"); + + try + { + af.setMaximum(jalview.bin.Cache.getDefault("SHOW_FULLSCREEN", + false)); + } catch (Exception ex) + { + } + } + } + } + + /** + * DOCUMENT ME! + * + * @param e + * DOCUMENT ME! + */ + public void cancel_actionPerformed(ActionEvent e) + { + try + { + this.setClosed(true); + } catch (Exception ex) + { + } + } + + public void textarea_mousePressed(MouseEvent e) + { + if (SwingUtilities.isRightMouseButton(e)) + { + JPopupMenu popup = new JPopupMenu("Edit"); + JMenuItem item = new JMenuItem("Copy"); + item.addActionListener(new ActionListener() + { + public void actionPerformed(ActionEvent e) + { + copyItem_actionPerformed(e); + } + }); + popup.add(item); + item = new JMenuItem("Paste"); + item.addActionListener(new ActionListener() + { + public void actionPerformed(ActionEvent e) + { + pasteMenu_actionPerformed(e); + } + }); + popup.add(item); + popup.show(this, e.getX() + 10, e.getY() + textarea.getY() + 40); + + } + } + +}