X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FCutAndPasteTransfer.java;h=38a920ab4c694b94bf78c23f40cc8bd11764b76a;hb=797df64fa2a0a30773d0f48f5494d4155e5a8be3;hp=33c58fb5df577c2bce6011dae7d19f58e1f5a10f;hpb=42dd3884dc6aaa13674d97649f194a4ee1d7422d;p=jalview.git

diff --git a/src/jalview/gui/CutAndPasteTransfer.java b/src/jalview/gui/CutAndPasteTransfer.java
index 33c58fb..38a920a 100755
--- a/src/jalview/gui/CutAndPasteTransfer.java
+++ b/src/jalview/gui/CutAndPasteTransfer.java
@@ -1,26 +1,260 @@
-/********************
- * 2004 Jalview Reengineered
- * Barton Group
- * Dundee University
- *
- * AM Waterhouse
- *******************/
-
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
+ * Copyright (C) 2011 J Procter, AM Waterhouse, J Engelhardt, LM Lui, G Barton, M Clamp, S Searle
+ * 
+ * This file is part of Jalview.
+ * 
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ * 
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ */
 package jalview.gui;
 
-import jalview.jbgui.GCutAndPasteTransfer;
 import java.awt.*;
+import java.awt.datatransfer.*;
+import java.awt.event.*;
+import javax.swing.*;
+
+import jalview.datamodel.*;
+import jalview.io.*;
+import jalview.jbgui.*;
 
+/**
+ * DOCUMENT ME!
+ * 
+ * @author $author$
+ * @version $Revision$
+ */
 public class CutAndPasteTransfer extends GCutAndPasteTransfer
 {
 
+  AlignViewport viewport;
+
+  public CutAndPasteTransfer()
+  {
+    SwingUtilities.invokeLater(new Runnable()
+    {
+      public void run()
+      {
+        textarea.requestFocus();
+      }
+    });
+
+  }
+
+  /**
+   * DOCUMENT ME!
+   */
+  public void setForInput(AlignViewport viewport)
+  {
+    this.viewport = viewport;
+    if (viewport != null)
+    {
+      ok.setText("Add");
+    }
+
+    getContentPane().add(inputButtonPanel, java.awt.BorderLayout.SOUTH);
+  }
+
+  /**
+   * DOCUMENT ME!
+   * 
+   * @return DOCUMENT ME!
+   */
   public String getText()
   {
     return textarea.getText();
   }
 
+  /**
+   * DOCUMENT ME!
+   * 
+   * @param text
+   *          DOCUMENT ME!
+   */
   public void setText(String text)
   {
     textarea.setText(text);
   }
+
+  public void appendText(String text)
+  {
+    textarea.append(text);
+  }
+
+  public void save_actionPerformed(ActionEvent e)
+  {
+    JalviewFileChooser chooser = new JalviewFileChooser(
+            jalview.bin.Cache.getProperty("LAST_DIRECTORY"));
+
+    chooser.setAcceptAllFileFilterUsed(false);
+    chooser.setFileView(new JalviewFileView());
+    chooser.setDialogTitle("Save Text to File");
+    chooser.setToolTipText("Save");
+
+    int value = chooser.showSaveDialog(this);
+
+    if (value == JalviewFileChooser.APPROVE_OPTION)
+    {
+      try
+      {
+        java.io.PrintWriter out = new java.io.PrintWriter(
+                new java.io.FileWriter(chooser.getSelectedFile()));
+
+        out.print(getText());
+        out.close();
+      } catch (Exception ex)
+      {
+        ex.printStackTrace();
+      }
+
+    }
+  }
+
+  /**
+   * DOCUMENT ME!
+   * 
+   * @param e
+   *          DOCUMENT ME!
+   */
+  public void copyItem_actionPerformed(ActionEvent e)
+  {
+    textarea.getSelectedText();
+    Clipboard c = Toolkit.getDefaultToolkit().getSystemClipboard();
+    c.setContents(new StringSelection(textarea.getSelectedText()), null);
+  }
+
+  /**
+   * DOCUMENT ME!
+   * 
+   * @param e
+   *          DOCUMENT ME!
+   */
+  public void pasteMenu_actionPerformed(ActionEvent e)
+  {
+    Clipboard c = Toolkit.getDefaultToolkit().getSystemClipboard();
+    Transferable contents = c.getContents(this);
+
+    if (contents == null)
+    {
+      return;
+    }
+
+    try
+    {
+      textarea.append((String) contents
+              .getTransferData(DataFlavor.stringFlavor));
+    } catch (Exception ex)
+    {
+    }
+  }
+
+  /**
+   * DOCUMENT ME!
+   * 
+   * @param e
+   *          DOCUMENT ME!
+   */
+  public void ok_actionPerformed(ActionEvent e)
+  {
+    String format = new IdentifyFile().Identify(getText(), "Paste");
+    // TODO: identify feature, annotation or tree file and parse appropriately.
+    Alignment al = null;
+
+    if (FormatAdapter.isValidFormat(format))
+    {
+      try
+      {
+        al = new FormatAdapter().readFile(getText(), "Paste", format);
+      } catch (java.io.IOException ex)
+      {
+        JOptionPane.showInternalMessageDialog(Desktop.desktop,
+                "Couldn't read the pasted text.\n" + ex.toString(),
+                "Error parsing text", JOptionPane.WARNING_MESSAGE);
+      }
+    }
+
+    if (al != null)
+    {
+      if (viewport != null)
+      {
+        for (int i = 0; i < al.getHeight(); i++)
+        {
+          viewport.getAlignment().addSequence(al.getSequenceAt(i));
+        }
+
+        viewport.firePropertyChange("alignment", null, viewport
+                .getAlignment().getSequences());
+      }
+      else
+      {
+        AlignFrame af = new AlignFrame(al, AlignFrame.DEFAULT_WIDTH,
+                AlignFrame.DEFAULT_HEIGHT);
+        af.currentFileFormat = format;
+        Desktop.addInternalFrame(af, "Cut & Paste input - " + format,
+                AlignFrame.DEFAULT_WIDTH, AlignFrame.DEFAULT_HEIGHT);
+        af.statusBar.setText("Successfully pasted alignment file");
+
+        try
+        {
+          af.setMaximum(jalview.bin.Cache.getDefault("SHOW_FULLSCREEN",
+                  false));
+        } catch (Exception ex)
+        {
+        }
+      }
+    }
+  }
+
+  /**
+   * DOCUMENT ME!
+   * 
+   * @param e
+   *          DOCUMENT ME!
+   */
+  public void cancel_actionPerformed(ActionEvent e)
+  {
+    try
+    {
+      this.setClosed(true);
+    } catch (Exception ex)
+    {
+    }
+  }
+
+  public void textarea_mousePressed(MouseEvent e)
+  {
+    if (SwingUtilities.isRightMouseButton(e))
+    {
+      JPopupMenu popup = new JPopupMenu("Edit");
+      JMenuItem item = new JMenuItem("Copy");
+      item.addActionListener(new ActionListener()
+      {
+        public void actionPerformed(ActionEvent e)
+        {
+          copyItem_actionPerformed(e);
+        }
+      });
+      popup.add(item);
+      item = new JMenuItem("Paste");
+      item.addActionListener(new ActionListener()
+      {
+        public void actionPerformed(ActionEvent e)
+        {
+          pasteMenu_actionPerformed(e);
+        }
+      });
+      popup.add(item);
+      popup.show(this, e.getX() + 10, e.getY() + textarea.getY() + 40);
+
+    }
+  }
+
 }