X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FCutAndPasteTransfer.java;h=4432d89f1381c5d27f01389df869fecb7415e873;hb=153dd62dc91da13ae732600e6ea55ddbe15eab39;hp=175a609d7833ccd57575020950d941b749e6e6a4;hpb=588042b69abf8e60bcc950b24c283933c7dd422f;p=jalview.git diff --git a/src/jalview/gui/CutAndPasteTransfer.java b/src/jalview/gui/CutAndPasteTransfer.java index 175a609..4432d89 100755 --- a/src/jalview/gui/CutAndPasteTransfer.java +++ b/src/jalview/gui/CutAndPasteTransfer.java @@ -1,130 +1,260 @@ -/* - * Jalview - A Sequence Alignment Editor and Viewer - * Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle - * - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 - * of the License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU General Public License for more details. - * - * You should have received a copy of the GNU General Public License - * along with this program; if not, write to the Free Software - * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA - */ -package jalview.gui; - -import java.awt.*; -import java.awt.datatransfer.*; -import java.awt.event.*; -import javax.swing.*; - -import jalview.datamodel.*; -import jalview.io.*; -import jalview.jbgui.*; - -public class CutAndPasteTransfer - extends GCutAndPasteTransfer -{ - public void setForInput() - { - getContentPane().add(inputButtonPanel, java.awt.BorderLayout.SOUTH); - } - - public String getText() - { - return textarea.getText(); - } - - public void setText(String text) - { - textarea.setText(text); - } - - public void copyItem_actionPerformed(ActionEvent e) - { - Clipboard c = Toolkit.getDefaultToolkit().getSystemClipboard(); - c.setContents(new StringSelection(textarea.getText()), null); - } - - public void pasteMenu_actionPerformed(ActionEvent e) - { - Clipboard c = Toolkit.getDefaultToolkit().getSystemClipboard(); - Transferable contents = c.getContents(this); - - if (contents == null) - { - return; - } - - try - { - textarea.setText( (String) contents.getTransferData( - DataFlavor.stringFlavor)); - } - catch (Exception ex) - { - } - } - - public void ok_actionPerformed(ActionEvent e) - { - String format = IdentifyFile.Identify(getText(), "Paste"); - SequenceI[] sequences = null; - - if (FormatAdapter.formats.contains(format)) - { - sequences = FormatAdapter.readFile(getText(), "Paste", format); - } - - if (sequences != null) - { - AlignFrame af = new AlignFrame(new Alignment(sequences)); - af.currentFileFormat = format; - Desktop.addInternalFrame(af, "Cut & Paste input - " + format, - AlignFrame.NEW_WINDOW_WIDTH, - AlignFrame.NEW_WINDOW_HEIGHT); - af.statusBar.setText("Successfully pasted alignment file"); - - try - { - af.setMaximum(Preferences.showFullscreen); - } - catch (Exception ex) - { - } - - try - { - this.setClosed(true); - } - catch (Exception ex) - { - } - } - else - { - JOptionPane.showInternalMessageDialog(Desktop.desktop, - "Couldn't read the pasted text.\n" + - "Formats currently supported are\n" + - "Fasta, MSF, Clustal, BLC, PIR, MSP, and PFAM", - "Error parsing text", - JOptionPane.WARNING_MESSAGE); - } - } - - public void cancel_actionPerformed(ActionEvent e) - { - try - { - this.setClosed(true); - } - catch (Exception ex) - { - } - } -} +/* + * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6) + * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle + * + * This file is part of Jalview. + * + * Jalview is free software: you can redistribute it and/or + * modify it under the terms of the GNU General Public License + * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. + * + * Jalview is distributed in the hope that it will be useful, but + * WITHOUT ANY WARRANTY; without even the implied warranty + * of MERCHANTABILITY or FITNESS FOR A PARTICULAR + * PURPOSE. See the GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public License along with Jalview. If not, see . + */ +package jalview.gui; + +import java.awt.*; +import java.awt.datatransfer.*; +import java.awt.event.*; +import javax.swing.*; + +import jalview.datamodel.*; +import jalview.io.*; +import jalview.jbgui.*; + +/** + * DOCUMENT ME! + * + * @author $author$ + * @version $Revision$ + */ +public class CutAndPasteTransfer extends GCutAndPasteTransfer +{ + + AlignViewport viewport; + + public CutAndPasteTransfer() + { + SwingUtilities.invokeLater(new Runnable() + { + public void run() + { + textarea.requestFocus(); + } + }); + + } + + /** + * DOCUMENT ME! + */ + public void setForInput(AlignViewport viewport) + { + this.viewport = viewport; + if (viewport != null) + { + ok.setText("Add"); + } + + getContentPane().add(inputButtonPanel, java.awt.BorderLayout.SOUTH); + } + + /** + * DOCUMENT ME! + * + * @return DOCUMENT ME! + */ + public String getText() + { + return textarea.getText(); + } + + /** + * DOCUMENT ME! + * + * @param text + * DOCUMENT ME! + */ + public void setText(String text) + { + textarea.setText(text); + } + + public void appendText(String text) + { + textarea.append(text); + } + + public void save_actionPerformed(ActionEvent e) + { + JalviewFileChooser chooser = new JalviewFileChooser(jalview.bin.Cache + .getProperty("LAST_DIRECTORY")); + + chooser.setAcceptAllFileFilterUsed(false); + chooser.setFileView(new JalviewFileView()); + chooser.setDialogTitle("Save Text to File"); + chooser.setToolTipText("Save"); + + int value = chooser.showSaveDialog(this); + + if (value == JalviewFileChooser.APPROVE_OPTION) + { + try + { + java.io.PrintWriter out = new java.io.PrintWriter( + new java.io.FileWriter(chooser.getSelectedFile())); + + out.print(getText()); + out.close(); + } catch (Exception ex) + { + ex.printStackTrace(); + } + + } + } + + /** + * DOCUMENT ME! + * + * @param e + * DOCUMENT ME! + */ + public void copyItem_actionPerformed(ActionEvent e) + { + textarea.getSelectedText(); + Clipboard c = Toolkit.getDefaultToolkit().getSystemClipboard(); + c.setContents(new StringSelection(textarea.getSelectedText()), null); + } + + /** + * DOCUMENT ME! + * + * @param e + * DOCUMENT ME! + */ + public void pasteMenu_actionPerformed(ActionEvent e) + { + Clipboard c = Toolkit.getDefaultToolkit().getSystemClipboard(); + Transferable contents = c.getContents(this); + + if (contents == null) + { + return; + } + + try + { + textarea.append((String) contents + .getTransferData(DataFlavor.stringFlavor)); + } catch (Exception ex) + { + } + } + + /** + * DOCUMENT ME! + * + * @param e + * DOCUMENT ME! + */ + public void ok_actionPerformed(ActionEvent e) + { + String format = new IdentifyFile().Identify(getText(), "Paste"); + // TODO: identify feature, annotation or tree file and parse appropriately. + Alignment al = null; + + if (FormatAdapter.isValidFormat(format)) + { + try + { + al = new FormatAdapter().readFile(getText(), "Paste", format); + } catch (java.io.IOException ex) + { + JOptionPane.showInternalMessageDialog(Desktop.desktop, + "Couldn't read the pasted text.\n" + ex.toString(), + "Error parsing text", JOptionPane.WARNING_MESSAGE); + } + } + + if (al != null) + { + if (viewport != null) + { + for (int i = 0; i < al.getHeight(); i++) + { + viewport.getAlignment().addSequence(al.getSequenceAt(i)); + } + + viewport.firePropertyChange("alignment", null, viewport + .getAlignment().getSequences()); + } + else + { + AlignFrame af = new AlignFrame(al, AlignFrame.DEFAULT_WIDTH, + AlignFrame.DEFAULT_HEIGHT); + af.currentFileFormat = format; + Desktop.addInternalFrame(af, "Cut & Paste input - " + format, + AlignFrame.DEFAULT_WIDTH, AlignFrame.DEFAULT_HEIGHT); + af.statusBar.setText("Successfully pasted alignment file"); + + try + { + af.setMaximum(jalview.bin.Cache.getDefault("SHOW_FULLSCREEN", + false)); + } catch (Exception ex) + { + } + } + } + } + + /** + * DOCUMENT ME! + * + * @param e + * DOCUMENT ME! + */ + public void cancel_actionPerformed(ActionEvent e) + { + try + { + this.setClosed(true); + } catch (Exception ex) + { + } + } + + public void textarea_mousePressed(MouseEvent e) + { + if (SwingUtilities.isRightMouseButton(e)) + { + JPopupMenu popup = new JPopupMenu("Edit"); + JMenuItem item = new JMenuItem("Copy"); + item.addActionListener(new ActionListener() + { + public void actionPerformed(ActionEvent e) + { + copyItem_actionPerformed(e); + } + }); + popup.add(item); + item = new JMenuItem("Paste"); + item.addActionListener(new ActionListener() + { + public void actionPerformed(ActionEvent e) + { + pasteMenu_actionPerformed(e); + } + }); + popup.add(item); + popup.show(this, e.getX() + 10, e.getY() + textarea.getY() + 40); + + } + } + +}