X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FCutAndPasteTransfer.java;h=7e55f38e7627eee9d04f3ae630975c0f111d70f6;hb=865a855a4ca87eadb3e5ff284ed32ed307d9c34b;hp=327609a686e9f907529db9a9f82349760accb6eb;hpb=6a46ce948a9fe8bb82cbc279fe8887b24b5cd59b;p=jalview.git diff --git a/src/jalview/gui/CutAndPasteTransfer.java b/src/jalview/gui/CutAndPasteTransfer.java index 327609a..7e55f38 100755 --- a/src/jalview/gui/CutAndPasteTransfer.java +++ b/src/jalview/gui/CutAndPasteTransfer.java @@ -1,90 +1,261 @@ -/******************** - * 2004 Jalview Reengineered - * Barton Group - * Dundee University - * - * AM Waterhouse - *******************/ - +/* + * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1) + * Copyright (C) 2014 The Jalview Authors + * + * This file is part of Jalview. + * + * Jalview is free software: you can redistribute it and/or + * modify it under the terms of the GNU General Public License + * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. + * + * Jalview is distributed in the hope that it will be useful, but + * WITHOUT ANY WARRANTY; without even the implied warranty + * of MERCHANTABILITY or FITNESS FOR A PARTICULAR + * PURPOSE. See the GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public License along with Jalview. If not, see . + * The Jalview Authors are detailed in the 'AUTHORS' file. + */ package jalview.gui; -import jalview.jbgui.GCutAndPasteTransfer; import java.awt.*; -import java.awt.event.ActionEvent; import java.awt.datatransfer.*; -import jalview.datamodel.Alignment; -import jalview.io.FormatAdapter; -import jalview.datamodel.SequenceI; -import javax.swing.JOptionPane; -import jalview.io.IdentifyFile; +import java.awt.event.*; +import javax.swing.*; + +import jalview.datamodel.*; +import jalview.io.*; +import jalview.jbgui.*; +/** + * Cut'n'paste files into the desktop See JAL-1105 + * + * @author $author$ + * @version $Revision$ + */ public class CutAndPasteTransfer extends GCutAndPasteTransfer { - public void setForInput() + + AlignViewport viewport; + + public CutAndPasteTransfer() { + SwingUtilities.invokeLater(new Runnable() + { + public void run() + { + textarea.requestFocus(); + } + }); + + } + + /** + * DOCUMENT ME! + */ + public void setForInput(AlignViewport viewport) + { + this.viewport = viewport; + if (viewport != null) + { + ok.setText("Add"); + } + getContentPane().add(inputButtonPanel, java.awt.BorderLayout.SOUTH); } + /** + * DOCUMENT ME! + * + * @return DOCUMENT ME! + */ public String getText() { return textarea.getText(); } + /** + * DOCUMENT ME! + * + * @param text + * DOCUMENT ME! + */ public void setText(String text) { textarea.setText(text); } + public void appendText(String text) + { + textarea.append(text); + } + + public void save_actionPerformed(ActionEvent e) + { + JalviewFileChooser chooser = new JalviewFileChooser( + jalview.bin.Cache.getProperty("LAST_DIRECTORY")); + + chooser.setAcceptAllFileFilterUsed(false); + chooser.setFileView(new JalviewFileView()); + chooser.setDialogTitle("Save Text to File"); + chooser.setToolTipText("Save"); + + int value = chooser.showSaveDialog(this); + + if (value == JalviewFileChooser.APPROVE_OPTION) + { + try + { + java.io.PrintWriter out = new java.io.PrintWriter( + new java.io.FileWriter(chooser.getSelectedFile())); + + out.print(getText()); + out.close(); + } catch (Exception ex) + { + ex.printStackTrace(); + } + + } + } + + /** + * DOCUMENT ME! + * + * @param e + * DOCUMENT ME! + */ public void copyItem_actionPerformed(ActionEvent e) { + textarea.getSelectedText(); Clipboard c = Toolkit.getDefaultToolkit().getSystemClipboard(); - c.setContents( new StringSelection( textarea.getText()) , null ) ; + c.setContents(new StringSelection(textarea.getSelectedText()), null); } + /** + * DOCUMENT ME! + * + * @param e + * DOCUMENT ME! + */ public void pasteMenu_actionPerformed(ActionEvent e) { Clipboard c = Toolkit.getDefaultToolkit().getSystemClipboard(); Transferable contents = c.getContents(this); + if (contents == null) + { return; - try{ - textarea.setText( (String) contents.getTransferData(DataFlavor. - stringFlavor)); - }catch(Exception ex){} + } + + try + { + textarea.append((String) contents + .getTransferData(DataFlavor.stringFlavor)); + } catch (Exception ex) + { + } } + /** + * DOCUMENT ME! + * + * @param e + * DOCUMENT ME! + */ public void ok_actionPerformed(ActionEvent e) { - String format = IdentifyFile.Identify(getText(), "Paste"); - SequenceI [] sequences = null; + String format = new IdentifyFile().Identify(getText(), "Paste"); + // TODO: identify feature, annotation or tree file and parse appropriately. + Alignment al = null; - if (FormatAdapter.formats.contains( format )) - sequences = FormatAdapter.readFile(getText(), "Paste", format); + if (FormatAdapter.isValidFormat(format)) + { + try + { + al = new FormatAdapter().readFile(getText(), "Paste", format); + } catch (java.io.IOException ex) + { + JOptionPane.showInternalMessageDialog(Desktop.desktop, + "Couldn't read the pasted text.\n" + ex.toString(), + "Error parsing text", JOptionPane.WARNING_MESSAGE); + } + } - - if(sequences!=null) + if (al != null) + { + if (viewport != null) + { + for (int i = 0; i < al.getHeight(); i++) { - AlignFrame af = new AlignFrame(new Alignment(sequences)); - af.currentFileFormat = format; - Desktop.addInternalFrame(af, "Cut & Paste input - "+format, - AlignFrame.NEW_WINDOW_WIDTH, - AlignFrame.NEW_WINDOW_HEIGHT); - af.statusBar.setText("Successfully pasted alignment file"); + viewport.getAlignment().addSequence(al.getSequenceAt(i)); } - else - JOptionPane.showInternalMessageDialog(Desktop.desktop, "Couldn't read the pasted text.\n" - +"Formats currently supported are\n" - +"Fasta, MSF, Clustal, BLC, PIR, MSP, and PFAM", - "Error parsing text", JOptionPane.WARNING_MESSAGE); + viewport.firePropertyChange("alignment", null, viewport + .getAlignment().getSequences()); + } + else + { + AlignFrame af = new AlignFrame(al, AlignFrame.DEFAULT_WIDTH, + AlignFrame.DEFAULT_HEIGHT); + af.currentFileFormat = format; + Desktop.addInternalFrame(af, "Cut & Paste input - " + format, + AlignFrame.DEFAULT_WIDTH, AlignFrame.DEFAULT_HEIGHT); + af.statusBar.setText("Successfully pasted alignment file"); + + try + { + af.setMaximum(jalview.bin.Cache.getDefault("SHOW_FULLSCREEN", + false)); + } catch (Exception ex) + { + } + } + } } + /** + * DOCUMENT ME! + * + * @param e + * DOCUMENT ME! + */ public void cancel_actionPerformed(ActionEvent e) { - try{ + try + { this.setClosed(true); - }catch(Exception ex){} + } catch (Exception ex) + { + } } + public void textarea_mousePressed(MouseEvent e) + { + if (SwingUtilities.isRightMouseButton(e)) + { + JPopupMenu popup = new JPopupMenu("Edit"); + JMenuItem item = new JMenuItem("Copy"); + item.addActionListener(new ActionListener() + { + public void actionPerformed(ActionEvent e) + { + copyItem_actionPerformed(e); + } + }); + popup.add(item); + item = new JMenuItem("Paste"); + item.addActionListener(new ActionListener() + { + public void actionPerformed(ActionEvent e) + { + pasteMenu_actionPerformed(e); + } + }); + popup.add(item); + popup.show(this, e.getX() + 10, e.getY() + textarea.getY() + 40); + + } + } }