X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FCutAndPasteTransfer.java;h=b85740576ccc4ac91643dd402260bff9f64bd187;hb=63f7dffaa9b668ad5ab7d8092e5232908e4b0bcb;hp=262fc41d14992dea85e2a885c59b26d37e0a6b33;hpb=99c58ee0ae2a848f982552e53feaf6d5cb9925e5;p=jalview.git diff --git a/src/jalview/gui/CutAndPasteTransfer.java b/src/jalview/gui/CutAndPasteTransfer.java index 262fc41..b857405 100755 --- a/src/jalview/gui/CutAndPasteTransfer.java +++ b/src/jalview/gui/CutAndPasteTransfer.java @@ -1,115 +1,258 @@ -/* -* Jalview - A Sequence Alignment Editor and Viewer -* Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle -* -* This program is free software; you can redistribute it and/or -* modify it under the terms of the GNU General Public License -* as published by the Free Software Foundation; either version 2 -* of the License, or (at your option) any later version. -* -* This program is distributed in the hope that it will be useful, -* but WITHOUT ANY WARRANTY; without even the implied warranty of -* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the -* GNU General Public License for more details. -* -* You should have received a copy of the GNU General Public License -* along with this program; if not, write to the Free Software -* Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA -*/ - -package jalview.gui; - -import jalview.jbgui.GCutAndPasteTransfer; -import java.awt.*; -import java.awt.event.ActionEvent; -import java.awt.datatransfer.*; -import jalview.datamodel.Alignment; -import jalview.io.FormatAdapter; -import jalview.datamodel.SequenceI; -import javax.swing.JOptionPane; -import jalview.io.IdentifyFile; - -public class CutAndPasteTransfer extends GCutAndPasteTransfer -{ - public void setForInput() - { - getContentPane().add(inputButtonPanel, java.awt.BorderLayout.SOUTH); - } - - public String getText() - { - return textarea.getText(); - } - - public void setText(String text) - { - textarea.setText(text); - } - - public void copyItem_actionPerformed(ActionEvent e) - { - Clipboard c = Toolkit.getDefaultToolkit().getSystemClipboard(); - c.setContents( new StringSelection( textarea.getText()) , null ) ; - } - - public void pasteMenu_actionPerformed(ActionEvent e) - { - Clipboard c = Toolkit.getDefaultToolkit().getSystemClipboard(); - Transferable contents = c.getContents(this); - if (contents == null) - return; - try{ - textarea.setText( (String) contents.getTransferData(DataFlavor. - stringFlavor)); - }catch(Exception ex){} - } - - public void ok_actionPerformed(ActionEvent e) - { - String format = IdentifyFile.Identify(getText(), "Paste"); - SequenceI [] sequences = null; - - if (FormatAdapter.formats.contains( format )) - sequences = FormatAdapter.readFile(getText(), "Paste", format); - - - if(sequences!=null) - { - AlignFrame af = new AlignFrame(new Alignment(sequences)); - af.currentFileFormat = format; - Desktop.addInternalFrame(af, "Cut & Paste input - " + format, - AlignFrame.NEW_WINDOW_WIDTH, - AlignFrame.NEW_WINDOW_HEIGHT); - af.statusBar.setText("Successfully pasted alignment file"); - try - { af.setMaximum(Preferences.showFullscreen); } - catch (Exception ex) - {} - try - { - this.setClosed(true); - } - catch (Exception ex) - {} - - - } - else - JOptionPane.showInternalMessageDialog(Desktop.desktop, - "Couldn't read the pasted text.\n" - + "Formats currently supported are\n" - + - "Fasta, MSF, Clustal, BLC, PIR, MSP, and PFAM", - "Error parsing text", - JOptionPane.WARNING_MESSAGE); - } - - public void cancel_actionPerformed(ActionEvent e) - { - try{ - this.setClosed(true); - }catch(Exception ex){} - } - - -} +/* + * Jalview - A Sequence Alignment Editor and Viewer + * Copyright (C) 2006 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle + * + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU General Public License + * as published by the Free Software Foundation; either version 2 + * of the License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public License + * along with this program; if not, write to the Free Software + * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA + */ +package jalview.gui; + +import jalview.datamodel.*; + +import jalview.io.*; + +import jalview.jbgui.*; + +import java.awt.*; +import java.awt.datatransfer.*; +import java.awt.event.*; + +import javax.swing.*; + + +/** + * DOCUMENT ME! + * + * @author $author$ + * @version $Revision$ + */ +public class CutAndPasteTransfer extends GCutAndPasteTransfer +{ + + AlignViewport viewport; + + public CutAndPasteTransfer() + { + SwingUtilities.invokeLater(new Runnable() + { + public void run() + { + textarea.requestFocus(); + } + }); + + } + + /** + * DOCUMENT ME! + */ + public void setForInput(AlignViewport viewport) + { + this.viewport = viewport; + getContentPane().add(inputButtonPanel, java.awt.BorderLayout.SOUTH); + } + + /** + * DOCUMENT ME! + * + * @return DOCUMENT ME! + */ + public String getText() + { + return textarea.getText(); + } + + /** + * DOCUMENT ME! + * + * @param text DOCUMENT ME! + */ + public void setText(String text) + { + textarea.setText(text); + } + + public void appendText(String text) + { + textarea.append(text); + } + + + public void save_actionPerformed(ActionEvent e) + { + JalviewFileChooser chooser = new JalviewFileChooser( + jalview.bin.Cache.getProperty( + "LAST_DIRECTORY")); + + chooser.setAcceptAllFileFilterUsed(false); + chooser.setFileView(new JalviewFileView()); + chooser.setDialogTitle("Save Text to File"); + chooser.setToolTipText("Save"); + + int value = chooser.showSaveDialog(this); + + if (value == JalviewFileChooser.APPROVE_OPTION) + { + try + { + java.io.PrintWriter out = new java.io.PrintWriter( + new java.io.FileWriter(chooser.getSelectedFile())); + + out.print(getText()); + out.close(); + } + catch (Exception ex) + { + ex.printStackTrace(); + } + + } + } + + + + /** + * DOCUMENT ME! + * + * @param e DOCUMENT ME! + */ + public void copyItem_actionPerformed(ActionEvent e) + { + textarea.getSelectedText(); + Clipboard c = Toolkit.getDefaultToolkit().getSystemClipboard(); + c.setContents(new StringSelection(textarea.getSelectedText()), null); + } + + /** + * DOCUMENT ME! + * + * @param e DOCUMENT ME! + */ + public void pasteMenu_actionPerformed(ActionEvent e) + { + Clipboard c = Toolkit.getDefaultToolkit().getSystemClipboard(); + Transferable contents = c.getContents(this); + + if (contents == null) + { + return; + } + + try + { + textarea.append((String) contents.getTransferData( + DataFlavor.stringFlavor)); + } + catch (Exception ex) + { + } + } + + /** + * DOCUMENT ME! + * + * @param e DOCUMENT ME! + */ + public void ok_actionPerformed(ActionEvent e) + { + String format = new IdentifyFile().Identify(getText(), "Paste"); + SequenceI[] sequences = null; + + if (FormatAdapter.isValidFormat(format)) + { + try{ + sequences = new FormatAdapter().readFile(getText(), "Paste", format); + }catch(java.io.IOException ex) + { + JOptionPane.showInternalMessageDialog(Desktop.desktop, + "Couldn't read the pasted text.\n" +ex.toString(), + "Error parsing text", + JOptionPane.WARNING_MESSAGE); + } + } + + if (sequences != null) + { + if(viewport!=null) + { + for(int i=0; i