X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FCutAndPasteTransfer.java;h=b85740576ccc4ac91643dd402260bff9f64bd187;hb=df9eac352d5fc1252e6377fec7cfc29fd841c932;hp=2bb456b698828ae06c7f7a60292ce1ba8d991803;hpb=f01e51c0c24a706409590174696ae72c4d573b7f;p=jalview.git

diff --git a/src/jalview/gui/CutAndPasteTransfer.java b/src/jalview/gui/CutAndPasteTransfer.java
index 2bb456b..b857405 100755
--- a/src/jalview/gui/CutAndPasteTransfer.java
+++ b/src/jalview/gui/CutAndPasteTransfer.java
@@ -1,6 +1,6 @@
 /*
  * Jalview - A Sequence Alignment Editor and Viewer
- * Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
+ * Copyright (C) 2006 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
  *
  * This program is free software; you can redistribute it and/or
  * modify it under the terms of the GNU General Public License
@@ -169,7 +169,7 @@ public class CutAndPasteTransfer extends GCutAndPasteTransfer
         String format = new IdentifyFile().Identify(getText(), "Paste");
         SequenceI[] sequences = null;
 
-        if (FormatAdapter.formats.contains(format))
+        if (FormatAdapter.isValidFormat(format))
         {
           try{
             sequences = new FormatAdapter().readFile(getText(), "Paste", format);
@@ -193,11 +193,13 @@ public class CutAndPasteTransfer extends GCutAndPasteTransfer
           }
           else
           {
-            AlignFrame af = new AlignFrame(new Alignment(sequences));
+            AlignFrame af = new AlignFrame(new Alignment(sequences),
+                                           AlignFrame.DEFAULT_WIDTH,
+                                           AlignFrame.DEFAULT_HEIGHT);
             af.currentFileFormat = format;
             Desktop.addInternalFrame(af, "Cut & Paste input - " + format,
-                                     AlignFrame.NEW_WINDOW_WIDTH,
-                                     AlignFrame.NEW_WINDOW_HEIGHT);
+                                     AlignFrame.DEFAULT_WIDTH,
+                                     AlignFrame.DEFAULT_HEIGHT);
             af.statusBar.setText("Successfully pasted alignment file");
 
             try