X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FCutAndPasteTransfer.java;h=ba1e85edacfcfc3dc4b862872cbad112569e4e24;hb=92fbe9788fe62f1e3fcf22e5e64a289d426b1869;hp=12f9e283a1a8516f57a15cdec2590f00297414a2;hpb=39fe02a01137354d94b28fdbfc128b3d4ca2d6f6;p=jalview.git

diff --git a/src/jalview/gui/CutAndPasteTransfer.java b/src/jalview/gui/CutAndPasteTransfer.java
index 12f9e28..ba1e85e 100755
--- a/src/jalview/gui/CutAndPasteTransfer.java
+++ b/src/jalview/gui/CutAndPasteTransfer.java
@@ -40,6 +40,8 @@ import javax.swing.*;
 public class CutAndPasteTransfer extends GCutAndPasteTransfer
 {
 
+  AlignViewport viewport;
+
   public CutAndPasteTransfer()
   {
     SwingUtilities.invokeLater(new Runnable()
@@ -55,9 +57,10 @@ public class CutAndPasteTransfer extends GCutAndPasteTransfer
     /**
      * DOCUMENT ME!
      */
-    public void setForInput()
+    public void setForInput(AlignViewport viewport)
     {
-        getContentPane().add(inputButtonPanel, java.awt.BorderLayout.SOUTH);
+      this.viewport = viewport;
+      getContentPane().add(inputButtonPanel, java.awt.BorderLayout.SOUTH);
     }
 
     /**
@@ -147,20 +150,31 @@ public class CutAndPasteTransfer extends GCutAndPasteTransfer
 
         if (sequences != null)
         {
+          if(viewport!=null)
+          {
+            for(int i=0; i<sequences.length; i++)
+              viewport.getAlignment().addSequence(sequences[i]);
+
+            viewport.firePropertyChange("alignment", null, viewport.getAlignment().getSequences());
+          }
+          else
+          {
             AlignFrame af = new AlignFrame(new Alignment(sequences));
             af.currentFileFormat = format;
             Desktop.addInternalFrame(af, "Cut & Paste input - " + format,
-                AlignFrame.NEW_WINDOW_WIDTH, AlignFrame.NEW_WINDOW_HEIGHT);
+                                     AlignFrame.NEW_WINDOW_WIDTH,
+                                     AlignFrame.NEW_WINDOW_HEIGHT);
             af.statusBar.setText("Successfully pasted alignment file");
 
             try
             {
-                af.setMaximum( jalview.bin.Cache.getDefault("SHOW_FULLSCREEN", false));
+              af.setMaximum(jalview.bin.Cache.getDefault("SHOW_FULLSCREEN", false));
             }
             catch (Exception ex)
             {
             }
 
+          }
             try
             {
                 this.setClosed(true);
@@ -208,7 +222,7 @@ public class CutAndPasteTransfer extends GCutAndPasteTransfer
                   }
             });
         popup.add(item);
-        popup.show(this, e.getX(), e.getY()+textarea.getY()+30);
+        popup.show(this, e.getX()+10, e.getY()+textarea.getY()+40);
 
       }
     }