X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FCutAndPasteTransfer.java;h=ba1e85edacfcfc3dc4b862872cbad112569e4e24;hb=92fbe9788fe62f1e3fcf22e5e64a289d426b1869;hp=175a609d7833ccd57575020950d941b749e6e6a4;hpb=588042b69abf8e60bcc950b24c283933c7dd422f;p=jalview.git

diff --git a/src/jalview/gui/CutAndPasteTransfer.java b/src/jalview/gui/CutAndPasteTransfer.java
index 175a609..ba1e85e 100755
--- a/src/jalview/gui/CutAndPasteTransfer.java
+++ b/src/jalview/gui/CutAndPasteTransfer.java
@@ -18,113 +18,213 @@
  */
 package jalview.gui;
 
+import jalview.datamodel.*;
+
+import jalview.io.*;
+
+import jalview.jbgui.*;
+
 import java.awt.*;
 import java.awt.datatransfer.*;
 import java.awt.event.*;
+
 import javax.swing.*;
 
-import jalview.datamodel.*;
-import jalview.io.*;
-import jalview.jbgui.*;
 
-public class CutAndPasteTransfer
-    extends GCutAndPasteTransfer
+/**
+ * DOCUMENT ME!
+ *
+ * @author $author$
+ * @version $Revision$
+ */
+public class CutAndPasteTransfer extends GCutAndPasteTransfer
 {
-  public void setForInput()
-  {
-    getContentPane().add(inputButtonPanel, java.awt.BorderLayout.SOUTH);
-  }
 
-  public String getText()
-  {
-    return textarea.getText();
-  }
+  AlignViewport viewport;
 
-  public void setText(String text)
+  public CutAndPasteTransfer()
   {
-    textarea.setText(text);
-  }
+    SwingUtilities.invokeLater(new Runnable()
+    {
+      public void run()
+      {
+        textarea.requestFocus();
+      }
+    });
 
-  public void copyItem_actionPerformed(ActionEvent e)
-  {
-    Clipboard c = Toolkit.getDefaultToolkit().getSystemClipboard();
-    c.setContents(new StringSelection(textarea.getText()), null);
   }
 
-  public void pasteMenu_actionPerformed(ActionEvent e)
-  {
-    Clipboard c = Toolkit.getDefaultToolkit().getSystemClipboard();
-    Transferable contents = c.getContents(this);
-
-    if (contents == null)
+    /**
+     * DOCUMENT ME!
+     */
+    public void setForInput(AlignViewport viewport)
     {
-      return;
+      this.viewport = viewport;
+      getContentPane().add(inputButtonPanel, java.awt.BorderLayout.SOUTH);
     }
 
-    try
+    /**
+     * DOCUMENT ME!
+     *
+     * @return DOCUMENT ME!
+     */
+    public String getText()
     {
-      textarea.setText( (String) contents.getTransferData(
-          DataFlavor.stringFlavor));
+        return textarea.getText();
     }
-    catch (Exception ex)
+
+    /**
+     * DOCUMENT ME!
+     *
+     * @param text DOCUMENT ME!
+     */
+    public void setText(String text)
     {
+        textarea.setText(text);
     }
-  }
 
-  public void ok_actionPerformed(ActionEvent e)
-  {
-    String format = IdentifyFile.Identify(getText(), "Paste");
-    SequenceI[] sequences = null;
+    public void appendText(String text)
+    {
+      textarea.append(text);
+    }
 
-    if (FormatAdapter.formats.contains(format))
+    /**
+     * DOCUMENT ME!
+     *
+     * @param e DOCUMENT ME!
+     */
+    public void copyItem_actionPerformed(ActionEvent e)
     {
-      sequences = FormatAdapter.readFile(getText(), "Paste", format);
+        textarea.getSelectedText();
+        Clipboard c = Toolkit.getDefaultToolkit().getSystemClipboard();
+        c.setContents(new StringSelection(textarea.getSelectedText()), null);
     }
 
-    if (sequences != null)
+    /**
+     * DOCUMENT ME!
+     *
+     * @param e DOCUMENT ME!
+     */
+    public void pasteMenu_actionPerformed(ActionEvent e)
     {
-      AlignFrame af = new AlignFrame(new Alignment(sequences));
-      af.currentFileFormat = format;
-      Desktop.addInternalFrame(af, "Cut & Paste input - " + format,
-                               AlignFrame.NEW_WINDOW_WIDTH,
-                               AlignFrame.NEW_WINDOW_HEIGHT);
-      af.statusBar.setText("Successfully pasted alignment file");
-
-      try
-      {
-        af.setMaximum(Preferences.showFullscreen);
-      }
-      catch (Exception ex)
-      {
-      }
+        Clipboard c = Toolkit.getDefaultToolkit().getSystemClipboard();
+        Transferable contents = c.getContents(this);
 
-      try
-      {
-        this.setClosed(true);
-      }
-      catch (Exception ex)
-      {
-      }
+        if (contents == null)
+        {
+            return;
+        }
+
+        try
+        {
+            textarea.append((String) contents.getTransferData(
+                    DataFlavor.stringFlavor));
+        }
+        catch (Exception ex)
+        {
+        }
     }
-    else
+
+    /**
+     * DOCUMENT ME!
+     *
+     * @param e DOCUMENT ME!
+     */
+    public void ok_actionPerformed(ActionEvent e)
     {
-      JOptionPane.showInternalMessageDialog(Desktop.desktop,
-                                            "Couldn't read the pasted text.\n" +
-                                            "Formats currently supported are\n" +
-                                            "Fasta, MSF, Clustal, BLC, PIR, MSP, and PFAM",
-                                            "Error parsing text",
-                                            JOptionPane.WARNING_MESSAGE);
+        String format = new IdentifyFile().Identify(getText(), "Paste");
+        SequenceI[] sequences = null;
+
+        if (FormatAdapter.formats.contains(format))
+        {
+          try{
+            sequences = new FormatAdapter().readFile(getText(), "Paste", format);
+          }catch(java.io.IOException ex)
+          {
+            JOptionPane.showInternalMessageDialog(Desktop.desktop,
+                                                  "Couldn't read the pasted text.\n" +ex.toString(),
+                                                  "Error parsing text",
+                                                  JOptionPane.WARNING_MESSAGE);
+          }
+        }
+
+        if (sequences != null)
+        {
+          if(viewport!=null)
+          {
+            for(int i=0; i<sequences.length; i++)
+              viewport.getAlignment().addSequence(sequences[i]);
+
+            viewport.firePropertyChange("alignment", null, viewport.getAlignment().getSequences());
+          }
+          else
+          {
+            AlignFrame af = new AlignFrame(new Alignment(sequences));
+            af.currentFileFormat = format;
+            Desktop.addInternalFrame(af, "Cut & Paste input - " + format,
+                                     AlignFrame.NEW_WINDOW_WIDTH,
+                                     AlignFrame.NEW_WINDOW_HEIGHT);
+            af.statusBar.setText("Successfully pasted alignment file");
+
+            try
+            {
+              af.setMaximum(jalview.bin.Cache.getDefault("SHOW_FULLSCREEN", false));
+            }
+            catch (Exception ex)
+            {
+            }
+
+          }
+            try
+            {
+                this.setClosed(true);
+            }
+            catch (Exception ex)
+            {
+            }
+        }
     }
-  }
 
-  public void cancel_actionPerformed(ActionEvent e)
-  {
-    try
+    /**
+     * DOCUMENT ME!
+     *
+     * @param e DOCUMENT ME!
+     */
+    public void cancel_actionPerformed(ActionEvent e)
     {
-      this.setClosed(true);
+        try
+        {
+            this.setClosed(true);
+        }
+        catch (Exception ex)
+        {
+        }
     }
-    catch (Exception ex)
+
+    public void textarea_mousePressed(MouseEvent e)
     {
+      if(SwingUtilities.isRightMouseButton(e))
+      {
+        JPopupMenu popup = new JPopupMenu("Edit");
+        JMenuItem item = new JMenuItem("Copy");
+        item.addActionListener(new ActionListener()
+            {public void actionPerformed(ActionEvent e)
+                  {
+                    copyItem_actionPerformed(e);
+                  }
+            });
+        popup.add(item);
+        item = new JMenuItem("Paste");
+        item.addActionListener(new ActionListener()
+            {public void actionPerformed(ActionEvent e)
+                  {
+                    pasteMenu_actionPerformed(e);
+                  }
+            });
+        popup.add(item);
+        popup.show(this, e.getX()+10, e.getY()+textarea.getY()+40);
+
+      }
     }
-  }
+
 }