X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FCutAndPasteTransfer.java;h=be2cf97ed288f69feac883ff111f07a1a9beffb5;hb=eacce9627f059fc2f9e880c81d8d1bdfbe7fe5b3;hp=67bce4acc06e68b878b6a24e364f558c646111a5;hpb=1ecf6419aba86993b3c223bf5ec0fa79427baf85;p=jalview.git

diff --git a/src/jalview/gui/CutAndPasteTransfer.java b/src/jalview/gui/CutAndPasteTransfer.java
index 67bce4a..be2cf97 100755
--- a/src/jalview/gui/CutAndPasteTransfer.java
+++ b/src/jalview/gui/CutAndPasteTransfer.java
@@ -1,55 +1,216 @@
-/********************
- * 2004 Jalview Reengineered
- * Barton Group
- * Dundee University
- *
- * AM Waterhouse
- *******************/
-
-package jalview.gui;
-
-import jalview.jbgui.GCutAndPasteTransfer;
-import java.awt.*;
-
-public class CutAndPasteTransfer extends GCutAndPasteTransfer
-{
-  public CutAndPasteTransfer(boolean forImport)
-  {
-    super();
-    for (int i = 0; i < jalview.io.FormatProperties.getFormats().size(); i++) {
-     formatChoice.addItem((String)jalview.io.FormatProperties.getFormats().elementAt(i));
-   }
-
-
-    if(forImport)
-    {
-      formatLabel.setVisible(false);
-      formatChoice.setVisible(false);
-      textarea.setBounds(new Rectangle(9, 6, 383, 284));
-    }
-  }
-
-  // this method is called once the user has selected an output format
-  public void formatForOutput()
-  {
-    textarea.setFont(new Font("Monospaced", Font.PLAIN, 12));
-    setLayout(new BorderLayout());
-    add(scrollPane, BorderLayout.CENTER);
-    remove(formatLabel);
-    remove(formatChoice);
-  }
-
-  public String getFormat()
-  {
-    return formatChoice.getSelectedItem().toString();
-  }
-  public String getText()
-  {
-    return textarea.getText();
-  }
-
-  public void setText(String text)
-  {
-    textarea.setText(text);
-  }
-}
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer
+ * Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
+ *
+ * This program is free software; you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation; either version 2
+ * of the License, or (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ * GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA
+ */
+package jalview.gui;
+
+import jalview.datamodel.*;
+
+import jalview.io.*;
+
+import jalview.jbgui.*;
+
+import java.awt.*;
+import java.awt.datatransfer.*;
+import java.awt.event.*;
+
+import javax.swing.*;
+
+
+/**
+ * DOCUMENT ME!
+ *
+ * @author $author$
+ * @version $Revision$
+ */
+public class CutAndPasteTransfer extends GCutAndPasteTransfer
+{
+
+  public CutAndPasteTransfer()
+  {
+    SwingUtilities.invokeLater(new Runnable()
+    {
+      public void run()
+      {
+        textarea.requestFocus();
+      }
+    });
+
+  }
+
+    /**
+     * DOCUMENT ME!
+     */
+    public void setForInput()
+    {
+        getContentPane().add(inputButtonPanel, java.awt.BorderLayout.SOUTH);
+    }
+
+    /**
+     * DOCUMENT ME!
+     *
+     * @return DOCUMENT ME!
+     */
+    public String getText()
+    {
+        return textarea.getText();
+    }
+
+    /**
+     * DOCUMENT ME!
+     *
+     * @param text DOCUMENT ME!
+     */
+    public void setText(String text)
+    {
+        textarea.setText(text);
+    }
+
+    public void appendText(String text)
+    {
+      textarea.append(text);
+    }
+
+    /**
+     * DOCUMENT ME!
+     *
+     * @param e DOCUMENT ME!
+     */
+    public void copyItem_actionPerformed(ActionEvent e)
+    {
+        textarea.getSelectedText();
+        Clipboard c = Toolkit.getDefaultToolkit().getSystemClipboard();
+        c.setContents(new StringSelection(textarea.getSelectedText()), null);
+    }
+
+    /**
+     * DOCUMENT ME!
+     *
+     * @param e DOCUMENT ME!
+     */
+    public void pasteMenu_actionPerformed(ActionEvent e)
+    {
+        Clipboard c = Toolkit.getDefaultToolkit().getSystemClipboard();
+        Transferable contents = c.getContents(this);
+
+        if (contents == null)
+        {
+            return;
+        }
+
+        try
+        {
+            textarea.append((String) contents.getTransferData(
+                    DataFlavor.stringFlavor));
+        }
+        catch (Exception ex)
+        {
+        }
+    }
+
+    /**
+     * DOCUMENT ME!
+     *
+     * @param e DOCUMENT ME!
+     */
+    public void ok_actionPerformed(ActionEvent e)
+    {
+        String format = IdentifyFile.Identify(getText(), "Paste");
+        SequenceI[] sequences = null;
+
+        if (FormatAdapter.formats.contains(format))
+        {
+            sequences = new FormatAdapter().readFile(getText(), "Paste", format);
+        }
+
+        if (sequences != null)
+        {
+            AlignFrame af = new AlignFrame(new Alignment(sequences));
+            af.currentFileFormat = format;
+            Desktop.addInternalFrame(af, "Cut & Paste input - " + format,
+                AlignFrame.NEW_WINDOW_WIDTH, AlignFrame.NEW_WINDOW_HEIGHT);
+            af.statusBar.setText("Successfully pasted alignment file");
+
+            try
+            {
+                af.setMaximum( jalview.bin.Cache.getDefault("SHOW_FULLSCREEN", false));
+            }
+            catch (Exception ex)
+            {
+            }
+
+            try
+            {
+                this.setClosed(true);
+            }
+            catch (Exception ex)
+            {
+            }
+        }
+        else
+        {
+            JOptionPane.showInternalMessageDialog(Desktop.desktop,
+                "Couldn't read the pasted text.\n" +
+                "Formats currently supported are\n" +
+                "Fasta, MSF, Clustal, BLC, PIR, MSP, and PFAM",
+                "Error parsing text", JOptionPane.WARNING_MESSAGE);
+        }
+    }
+
+    /**
+     * DOCUMENT ME!
+     *
+     * @param e DOCUMENT ME!
+     */
+    public void cancel_actionPerformed(ActionEvent e)
+    {
+        try
+        {
+            this.setClosed(true);
+        }
+        catch (Exception ex)
+        {
+        }
+    }
+
+    public void textarea_mousePressed(MouseEvent e)
+    {
+      if(SwingUtilities.isRightMouseButton(e))
+      {
+        JPopupMenu popup = new JPopupMenu("Edit");
+        JMenuItem item = new JMenuItem("Copy");
+        item.addActionListener(new ActionListener()
+            {public void actionPerformed(ActionEvent e)
+                  {
+                    copyItem_actionPerformed(e);
+                  }
+            });
+        popup.add(item);
+        item = new JMenuItem("Paste");
+        item.addActionListener(new ActionListener()
+            {public void actionPerformed(ActionEvent e)
+                  {
+                    pasteMenu_actionPerformed(e);
+                  }
+            });
+        popup.add(item);
+        popup.show(this, e.getX(), e.getY()+textarea.getY()+30);
+
+      }
+    }
+
+}