X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FCutAndPasteTransfer.java;h=c8901d3088cd70b7c9a5173d3ce77817667c6180;hb=b2f9a8d7bce642ff4011bc6d49e02bb0569fbb11;hp=67bce4acc06e68b878b6a24e364f558c646111a5;hpb=1ecf6419aba86993b3c223bf5ec0fa79427baf85;p=jalview.git

diff --git a/src/jalview/gui/CutAndPasteTransfer.java b/src/jalview/gui/CutAndPasteTransfer.java
old mode 100755
new mode 100644
index 67bce4a..c8901d3
--- a/src/jalview/gui/CutAndPasteTransfer.java
+++ b/src/jalview/gui/CutAndPasteTransfer.java
@@ -1,55 +1,262 @@
-/********************
- * 2004 Jalview Reengineered
- * Barton Group
- * Dundee University
- *
- * AM Waterhouse
- *******************/
-
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Copyright (C) 2014 The Jalview Authors
+ * 
+ * This file is part of Jalview.
+ * 
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ *  
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
 package jalview.gui;
 
-import jalview.jbgui.GCutAndPasteTransfer;
 import java.awt.*;
+import java.awt.datatransfer.*;
+import java.awt.event.*;
+import javax.swing.*;
+
+import jalview.datamodel.*;
+import jalview.io.*;
+import jalview.jbgui.*;
+import jalview.util.MessageManager;
 
+/**
+ * Cut'n'paste files into the desktop See JAL-1105
+ * 
+ * @author $author$
+ * @version $Revision$
+ */
 public class CutAndPasteTransfer extends GCutAndPasteTransfer
 {
-  public CutAndPasteTransfer(boolean forImport)
-  {
-    super();
-    for (int i = 0; i < jalview.io.FormatProperties.getFormats().size(); i++) {
-     formatChoice.addItem((String)jalview.io.FormatProperties.getFormats().elementAt(i));
-   }
 
+  AlignViewport viewport;
 
-    if(forImport)
+  public CutAndPasteTransfer()
+  {
+    SwingUtilities.invokeLater(new Runnable()
     {
-      formatLabel.setVisible(false);
-      formatChoice.setVisible(false);
-      textarea.setBounds(new Rectangle(9, 6, 383, 284));
-    }
-  }
+      public void run()
+      {
+        textarea.requestFocus();
+      }
+    });
 
-  // this method is called once the user has selected an output format
-  public void formatForOutput()
-  {
-    textarea.setFont(new Font("Monospaced", Font.PLAIN, 12));
-    setLayout(new BorderLayout());
-    add(scrollPane, BorderLayout.CENTER);
-    remove(formatLabel);
-    remove(formatChoice);
   }
 
-  public String getFormat()
+  /**
+   * DOCUMENT ME!
+   */
+  public void setForInput(AlignViewport viewport)
   {
-    return formatChoice.getSelectedItem().toString();
+    this.viewport = viewport;
+    if (viewport != null)
+    {
+      ok.setText(MessageManager.getString("action.add"));
+    }
+
+    getContentPane().add(inputButtonPanel, java.awt.BorderLayout.SOUTH);
   }
+
+  /**
+   * DOCUMENT ME!
+   * 
+   * @return DOCUMENT ME!
+   */
   public String getText()
   {
     return textarea.getText();
   }
 
+  /**
+   * DOCUMENT ME!
+   * 
+   * @param text
+   *          DOCUMENT ME!
+   */
   public void setText(String text)
   {
     textarea.setText(text);
   }
+
+  public void appendText(String text)
+  {
+    textarea.append(text);
+  }
+
+  public void save_actionPerformed(ActionEvent e)
+  {
+    JalviewFileChooser chooser = new JalviewFileChooser(
+            jalview.bin.Cache.getProperty("LAST_DIRECTORY"));
+
+    chooser.setAcceptAllFileFilterUsed(false);
+    chooser.setFileView(new JalviewFileView());
+    chooser.setDialogTitle("Save Text to File");
+    chooser.setToolTipText(MessageManager.getString("action.save"));
+
+    int value = chooser.showSaveDialog(this);
+
+    if (value == JalviewFileChooser.APPROVE_OPTION)
+    {
+      try
+      {
+        java.io.PrintWriter out = new java.io.PrintWriter(
+                new java.io.FileWriter(chooser.getSelectedFile()));
+
+        out.print(getText());
+        out.close();
+      } catch (Exception ex)
+      {
+        ex.printStackTrace();
+      }
+
+    }
+  }
+
+  /**
+   * DOCUMENT ME!
+   * 
+   * @param e
+   *          DOCUMENT ME!
+   */
+  public void copyItem_actionPerformed(ActionEvent e)
+  {
+    textarea.getSelectedText();
+    Clipboard c = Toolkit.getDefaultToolkit().getSystemClipboard();
+    c.setContents(new StringSelection(textarea.getSelectedText()), null);
+  }
+
+  /**
+   * DOCUMENT ME!
+   * 
+   * @param e
+   *          DOCUMENT ME!
+   */
+  public void pasteMenu_actionPerformed(ActionEvent e)
+  {
+    Clipboard c = Toolkit.getDefaultToolkit().getSystemClipboard();
+    Transferable contents = c.getContents(this);
+
+    if (contents == null)
+    {
+      return;
+    }
+
+    try
+    {
+      textarea.append((String) contents
+              .getTransferData(DataFlavor.stringFlavor));
+    } catch (Exception ex)
+    {
+    }
+  }
+
+  /**
+   * DOCUMENT ME!
+   * 
+   * @param e
+   *          DOCUMENT ME!
+   */
+  public void ok_actionPerformed(ActionEvent e)
+  {
+    String format = new IdentifyFile().Identify(getText(), "Paste");
+    // TODO: identify feature, annotation or tree file and parse appropriately.
+    Alignment al = null;
+
+    if (FormatAdapter.isValidFormat(format))
+    {
+      try
+      {
+        al = new FormatAdapter().readFile(getText(), "Paste", format);
+      } catch (java.io.IOException ex)
+      {
+        JOptionPane.showInternalMessageDialog(Desktop.desktop,
+        		MessageManager.formatMessage("label.couldnt_read_pasted_text", new String[]{ex.toString()}),
+                MessageManager.getString("label.error_parsing_text"), JOptionPane.WARNING_MESSAGE);
+      }
+    }
+
+    if (al != null)
+    {
+      if (viewport != null)
+      {
+        for (int i = 0; i < al.getHeight(); i++)
+        {
+          viewport.getAlignment().addSequence(al.getSequenceAt(i));
+        }
+
+        viewport.firePropertyChange("alignment", null, viewport
+                .getAlignment().getSequences());
+      }
+      else
+      {
+        AlignFrame af = new AlignFrame(al, AlignFrame.DEFAULT_WIDTH,
+                AlignFrame.DEFAULT_HEIGHT);
+        af.currentFileFormat = format;
+        Desktop.addInternalFrame(af, MessageManager.formatMessage("label.input_cut_paste_params", new String[]{format}),
+                AlignFrame.DEFAULT_WIDTH, AlignFrame.DEFAULT_HEIGHT);
+        af.statusBar.setText(MessageManager.getString("label.successfully_pasted_alignment_file"));
+
+        try
+        {
+          af.setMaximum(jalview.bin.Cache.getDefault("SHOW_FULLSCREEN",
+                  false));
+        } catch (Exception ex)
+        {
+        }
+      }
+    }
+  }
+
+  /**
+   * DOCUMENT ME!
+   * 
+   * @param e
+   *          DOCUMENT ME!
+   */
+  public void cancel_actionPerformed(ActionEvent e)
+  {
+    try
+    {
+      this.setClosed(true);
+    } catch (Exception ex)
+    {
+    }
+  }
+
+  public void textarea_mousePressed(MouseEvent e)
+  {
+    if (SwingUtilities.isRightMouseButton(e))
+    {
+      JPopupMenu popup = new JPopupMenu(MessageManager.getString("action.edit"));
+      JMenuItem item = new JMenuItem(MessageManager.getString("action.copy"));
+      item.addActionListener(new ActionListener()
+      {
+        public void actionPerformed(ActionEvent e)
+        {
+          copyItem_actionPerformed(e);
+        }
+      });
+      popup.add(item);
+      item = new JMenuItem(MessageManager.getString("action.paste"));
+      item.addActionListener(new ActionListener()
+      {
+        public void actionPerformed(ActionEvent e)
+        {
+          pasteMenu_actionPerformed(e);
+        }
+      });
+      popup.add(item);
+      popup.show(this, e.getX() + 10, e.getY() + textarea.getY() + 40);
+
+    }
+  }
+
 }