X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FDesktop.java;h=00b359a38921144b3beaf9bbd287acd3096aaea0;hb=8c9072337270d0e4c26c569346d5ba1f829e08d3;hp=387a2a96cb7bd0c91ddd3a90c0b17e52bacb1ca5;hpb=8721e357295c50d586f103aeadd6efac7714fb60;p=jalview.git

diff --git a/src/jalview/gui/Desktop.java b/src/jalview/gui/Desktop.java
index 387a2a9..00b359a 100644
--- a/src/jalview/gui/Desktop.java
+++ b/src/jalview/gui/Desktop.java
@@ -64,12 +64,10 @@ import java.awt.event.FocusListener;
 import java.awt.event.KeyEvent;
 import java.awt.event.MouseAdapter;
 import java.awt.event.MouseEvent;
-import java.awt.event.MouseListener;
 import java.awt.event.WindowAdapter;
 import java.awt.event.WindowEvent;
 import java.beans.PropertyChangeEvent;
 import java.beans.PropertyChangeListener;
-import java.beans.PropertyVetoException;
 import java.io.BufferedInputStream;
 import java.io.File;
 import java.io.FileOutputStream;
@@ -102,6 +100,8 @@ import javax.swing.KeyStroke;
 import javax.swing.SwingUtilities;
 import javax.swing.event.HyperlinkEvent;
 import javax.swing.event.HyperlinkEvent.EventType;
+import javax.swing.event.InternalFrameAdapter;
+import javax.swing.event.InternalFrameEvent;
 import javax.swing.event.MenuEvent;
 import javax.swing.event.MenuListener;
 
@@ -814,24 +814,25 @@ public class Desktop extends jalview.jbgui.GDesktop implements
               * ((openFrameCount - 1) % 10) + yOffset);
     }
 
+    /*
+     * add an entry for the new frame in the Window menu 
+     * (and remove it when the frame is closed)
+     */
     final JMenuItem menuItem = new JMenuItem(title);
-    frame.addInternalFrameListener(new javax.swing.event.InternalFrameAdapter()
+    frame.addInternalFrameListener(new InternalFrameAdapter()
     {
       @Override
-      public void internalFrameActivated(
-              javax.swing.event.InternalFrameEvent evt)
+      public void internalFrameActivated(InternalFrameEvent evt)
       {
         JInternalFrame itf = desktop.getSelectedFrame();
         if (itf != null)
         {
           itf.requestFocus();
         }
-
       }
 
       @Override
-      public void internalFrameClosed(
-              javax.swing.event.InternalFrameEvent evt)
+      public void internalFrameClosed(InternalFrameEvent evt)
       {
         PaintRefresher.RemoveComponent(frame);
 
@@ -843,11 +844,23 @@ public class Desktop extends jalview.jbgui.GDesktop implements
         {
           openFrameCount--;
         }
+
+        /*
+         * ensure no reference to alignFrame retained by menu item listener
+         */
+        if (menuItem.getActionListeners().length > 0)
+        {
+          menuItem.removeActionListener(menuItem.getActionListeners()[0]);
+        }
         windowMenu.remove(menuItem);
         JInternalFrame itf = desktop.getSelectedFrame();
         if (itf != null)
         {
           itf.requestFocus();
+          if (itf instanceof AlignFrame)
+          {
+            Jalview.setCurrentAlignFrame((AlignFrame) itf);
+          }
         }
         System.gc();
       };
@@ -868,47 +881,6 @@ public class Desktop extends jalview.jbgui.GDesktop implements
         }
       }
     });
-    menuItem.addMouseListener(new MouseListener()
-    {
-
-      @Override
-      public void mouseReleased(MouseEvent e)
-      {
-      }
-
-      @Override
-      public void mousePressed(MouseEvent e)
-      {
-      }
-
-      @Override
-      public void mouseExited(MouseEvent e)
-      {
-        try
-        {
-          frame.setSelected(false);
-        } catch (PropertyVetoException e1)
-        {
-        }
-      }
-
-      @Override
-      public void mouseEntered(MouseEvent e)
-      {
-        try
-        {
-          frame.setSelected(true);
-        } catch (PropertyVetoException e1)
-        {
-        }
-      }
-
-      @Override
-      public void mouseClicked(MouseEvent e)
-      {
-
-      }
-    });
 
     windowMenu.add(menuItem);
 
@@ -1328,6 +1300,7 @@ public class Desktop extends jalview.jbgui.GDesktop implements
   @Override
   public void closeAll_actionPerformed(ActionEvent e)
   {
+    // TODO show a progress bar while closing?
     JInternalFrame[] frames = desktop.getAllFrames();
     for (int i = 0; i < frames.length; i++)
     {
@@ -1338,6 +1311,7 @@ public class Desktop extends jalview.jbgui.GDesktop implements
       {
       }
     }
+    Jalview.setCurrentAlignFrame(null);
     System.out.println("ALL CLOSED");
     if (v_client != null)
     {
@@ -1354,6 +1328,7 @@ public class Desktop extends jalview.jbgui.GDesktop implements
     {
       ssm.resetAll();
     }
+    System.gc();
   }
 
   @Override