X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FDesktop.java;h=1b85dd5c0261dd949faddd021b782f2a60f19713;hb=51b0b157926ed477cb558ca5971126bf9fccbd31;hp=59541bb1f66e5562e81919850a25452778ab790c;hpb=2e10281fc7181b019c7885a516cc743574403a43;p=jalview.git

diff --git a/src/jalview/gui/Desktop.java b/src/jalview/gui/Desktop.java
index 59541bb..1b85dd5 100644
--- a/src/jalview/gui/Desktop.java
+++ b/src/jalview/gui/Desktop.java
@@ -204,6 +204,16 @@ public class Desktop extends jalview.jbgui.GDesktop
   /** Singleton Desktop instance */
   public static Desktop instance;
 
+  /**
+   * BH TEMPORARY ONLY -- should use ApplicationSingleton
+   * 
+   * @return
+   */
+  public static Desktop getInstance()
+  {
+    return instance;
+  }
+
   public static MyDesktopPane desktop;
 
   public static MyDesktopPane getDesktop()
@@ -871,8 +881,8 @@ public class Desktop extends jalview.jbgui.GDesktop
     frame.setMaximizable(resizable);
     frame.setIconifiable(resizable);
     frame.setOpaque(Platform.isJS());
-
-    if (frame.getX() < 1 && frame.getY() < 1)
+    boolean isEmbedded = (Platform.getDimIfEmbedded(frame, -1, -1) != null);
+    if (!isEmbedded && frame.getX() < 1 && frame.getY() < 1)
     {
       frame.setLocation(xOffset * openFrameCount,
               yOffset * ((openFrameCount - 1) % 10) + yOffset);
@@ -3364,4 +3374,5 @@ public class Desktop extends jalview.jbgui.GDesktop
     }
     return result;
   }
+
 }