X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FDesktop.java;h=259e69378b606da9cc2cec0d7fb0554afd49f2fc;hb=b2829c5d7e7815e5e261d39964ade91ed5225510;hp=9a696e949736a02e1c6fe543b0677df3dd1df15b;hpb=d156987a513b1da92fd6fbf7678b4a8e7ffc8d08;p=jalview.git

diff --git a/src/jalview/gui/Desktop.java b/src/jalview/gui/Desktop.java
index 9a696e9..259e693 100644
--- a/src/jalview/gui/Desktop.java
+++ b/src/jalview/gui/Desktop.java
@@ -32,6 +32,7 @@ import jalview.io.FileFormatException;
 import jalview.io.FileFormatI;
 import jalview.io.FileFormats;
 import jalview.io.FileLoader;
+import jalview.io.FormatAdapter;
 import jalview.io.IdentifyFile;
 import jalview.io.JalviewFileChooser;
 import jalview.io.JalviewFileView;
@@ -116,6 +117,8 @@ import javax.swing.event.InternalFrameEvent;
 import javax.swing.event.MenuEvent;
 import javax.swing.event.MenuListener;
 
+import org.stackoverflowusers.file.WindowsShortcut;
+
 /**
  * Jalview Desktop
  * 
@@ -512,7 +515,7 @@ public class Desktop extends jalview.jbgui.GDesktop
   {
     final Desktop me = this;
     // Thread off the news reader, in case there are connection problems.
-    addDialogThread(new Runnable()
+    new Thread(new Runnable()
     {
       @Override
       public void run()
@@ -523,13 +526,13 @@ public class Desktop extends jalview.jbgui.GDesktop
         showNews.setVisible(true);
         Cache.log.debug("Completed news thread.");
       }
-    });
+    }).start();
   }
 
   public void getIdentifiersOrgData()
   {
     // Thread off the identifiers fetcher
-    addDialogThread(new Runnable()
+    new Thread(new Runnable()
     {
       @Override
       public void run()
@@ -546,7 +549,8 @@ public class Desktop extends jalview.jbgui.GDesktop
                   + e.getMessage());
         }
       }
-    });
+    }).start();
+    ;
   }
 
   @Override
@@ -3294,13 +3298,67 @@ public class Desktop extends jalview.jbgui.GDesktop
     return groovyConsole;
   }
 
+  /**
+   * handles the payload of a drag and drop event.
+   * 
+   * TODO refactor to desktop utilities class
+   * 
+   * @param files
+   *          - Data source strings extracted from the drop event
+   * @param protocols
+   *          - protocol for each data source extracted from the drop event
+   * @param evt
+   *          - the drop event
+   * @param t
+   *          - the payload from the drop event
+   * @throws Exception
+   */
   public static void transferFromDropTarget(List<String> files,
           List<DataSourceType> protocols, DropTargetDropEvent evt,
           Transferable t) throws Exception
   {
 
     DataFlavor uriListFlavor = new DataFlavor(
-            "text/uri-list;class=java.lang.String");
+            "text/uri-list;class=java.lang.String"), urlFlavour = null;
+    try
+    {
+      urlFlavour = new DataFlavor(
+              "application/x-java-url; class=java.net.URL");
+    } catch (ClassNotFoundException cfe)
+    {
+      Cache.log.debug("Couldn't instantiate the URL dataflavor.", cfe);
+    }
+
+    if (urlFlavour != null && t.isDataFlavorSupported(urlFlavour))
+    {
+
+      try
+      {
+      java.net.URL url = (URL) t.getTransferData(urlFlavour);
+        // nb: java 8 osx bug https://bugs.openjdk.java.net/browse/JDK-8156099
+        // means url may be null.
+      if (url != null)
+      {
+        protocols.add(DataSourceType.URL);
+        files.add(url.toString());
+        Cache.log.debug("Drop handled as URL dataflavor "
+                + files.get(files.size() - 1));
+          return;
+        }
+        else
+        {
+          if (Platform.isAMac())
+          {
+            System.err.println(
+                    "Please ignore plist error - occurs due to problem with java 8 on OSX");
+          }
+          ;
+      }
+      } catch (Throwable ex)
+      {
+        Cache.log.debug("URL drop handler failed.", ex);
+      }
+    }
     if (t.isDataFlavorSupported(DataFlavor.javaFileListFlavor))
     {
       // Works on Windows and MacOSX
@@ -3328,63 +3386,112 @@ public class Desktop extends jalview.jbgui.GDesktop
         // fallback to text: workaround - on OSX where there's a JVM bug
         Cache.log.debug("standard URIListFlavor failed. Trying text");
         // try text fallback
-        data = (String) t.getTransferData(
-                new DataFlavor("text/plain;class=java.lang.String"));
-        if (Cache.log.isDebugEnabled())
+        DataFlavor textDf = new DataFlavor(
+                "text/plain;class=java.lang.String");
+        if (t.isDataFlavorSupported(textDf))
         {
-          Cache.log.debug("fallback returned " + data);
+          data = (String) t.getTransferData(textDf);
         }
+
+        Cache.log.debug("Plain text drop content returned "
+                + (data == null ? "Null - failed" : data));
+
       }
-      while (protocols.size() < files.size())
-      {
-        Cache.log.debug("Adding missing FILE protocol for "
-                + files.get(protocols.size()));
-        protocols.add(DataSourceType.FILE);
-      }
-      for (java.util.StringTokenizer st = new java.util.StringTokenizer(
-              data, "\r\n"); st.hasMoreTokens();)
+      if (data != null)
       {
-        added = true;
-        String s = st.nextToken();
-        if (s.startsWith("#"))
-        {
-          // the line is a comment (as per the RFC 2483)
-          continue;
-        }
-        java.net.URI uri = new java.net.URI(s);
-        if (uri.getScheme().toLowerCase().startsWith("http"))
+        while (protocols.size() < files.size())
         {
-          protocols.add(DataSourceType.URL);
-          files.add(uri.toString());
+          Cache.log.debug("Adding missing FILE protocol for "
+                  + files.get(protocols.size()));
+          protocols.add(DataSourceType.FILE);
         }
-        else
+        for (java.util.StringTokenizer st = new java.util.StringTokenizer(
+                data, "\r\n"); st.hasMoreTokens();)
         {
-          // otherwise preserve old behaviour: catch all for file objects
-          java.io.File file = new java.io.File(uri);
-          protocols.add(DataSourceType.FILE);
-          files.add(file.toString());
+          added = true;
+          String s = st.nextToken();
+          if (s.startsWith("#"))
+          {
+            // the line is a comment (as per the RFC 2483)
+            continue;
+          }
+          java.net.URI uri = new java.net.URI(s);
+          if (uri.getScheme().toLowerCase().startsWith("http"))
+          {
+            protocols.add(DataSourceType.URL);
+            files.add(uri.toString());
+          }
+          else
+          {
+            // otherwise preserve old behaviour: catch all for file objects
+            java.io.File file = new java.io.File(uri);
+            protocols.add(DataSourceType.FILE);
+            files.add(file.toString());
+          }
         }
       }
+
       if (Cache.log.isDebugEnabled())
       {
         if (data == null || !added)
         {
-          Cache.log.debug(
-                  "Couldn't resolve drop data. Here are the supported flavors:");
-          for (DataFlavor fl : t.getTransferDataFlavors())
+
+          if (t.getTransferDataFlavors() != null
+                  && t.getTransferDataFlavors().length > 0)
           {
             Cache.log.debug(
-                    "Supported transfer dataflavor: " + fl.toString());
-            Object df = t.getTransferData(fl);
-            if (df != null)
-            {
-              Cache.log.debug("Retrieves: " + df);
-            }
-            else
+                    "Couldn't resolve drop data. Here are the supported flavors:");
+            for (DataFlavor fl : t.getTransferDataFlavors())
             {
-              Cache.log.debug("Retrieved nothing");
+              Cache.log.debug(
+                      "Supported transfer dataflavor: " + fl.toString());
+              Object df = t.getTransferData(fl);
+              if (df != null)
+              {
+                Cache.log.debug("Retrieves: " + df);
+              }
+              else
+              {
+                Cache.log.debug("Retrieved nothing");
+              }
             }
           }
+          else
+          {
+            Cache.log.debug("Couldn't resolve dataflavor for drop: "
+                    + t.toString());
+          }
+        }
+      }
+    }
+    if (Platform.isWindows())
+
+    {
+      Cache.log.debug("Scanning dropped content for Windows Link Files");
+
+      // resolve any .lnk files in the file drop
+      for (int f = 0; f < files.size(); f++)
+      {
+        String source = files.get(f).toLowerCase();
+        if (protocols.get(f).equals(DataSourceType.FILE)
+                && (source.endsWith(".lnk") || source.endsWith(".url")
+                        || source.endsWith(".site")))
+        {
+          try {
+            File lf = new File(files.get(f));
+            // process link file to get a URL
+            Cache.log.debug("Found potential link file: " + lf);
+            WindowsShortcut wscfile = new WindowsShortcut(lf);
+            String fullname = wscfile.getRealFilename();
+            protocols.set(f, FormatAdapter.checkProtocol(fullname));
+            files.set(f, fullname);
+            Cache.log.debug("Parsed real filename " + fullname
+                    + " to extract protocol: " + protocols.get(f));
+          }
+          catch (Exception ex)
+          {
+            Cache.log.error("Couldn't parse "+files.get(f)+" as a link file.",ex);
+          }
         }
       }
     }