X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FDesktop.java;h=2a72e44c3aeb459d575b9a01f0d40d73a9621a35;hb=a45774ee31d9f35d4eff46d54d7deab719afb092;hp=dbb6955bb565c6ed93e5941bcee3339be37ca0b6;hpb=329abf57c756ac530604dce9136045b0bd5ffaca;p=jalview.git diff --git a/src/jalview/gui/Desktop.java b/src/jalview/gui/Desktop.java old mode 100755 new mode 100644 index dbb6955..2a72e44 --- a/src/jalview/gui/Desktop.java +++ b/src/jalview/gui/Desktop.java @@ -1,6 +1,6 @@ /* - * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6) - * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle + * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7) + * Copyright (C) 2011 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle * * This file is part of Jalview. * @@ -18,28 +18,68 @@ package jalview.gui; import jalview.bin.Cache; -import jalview.io.*; +import jalview.io.FileLoader; +import jalview.io.FormatAdapter; +import jalview.io.IdentifyFile; +import jalview.io.JalviewFileChooser; +import jalview.io.JalviewFileView; import jalview.ws.params.ParamManager; -import java.awt.*; -import java.awt.datatransfer.*; -import java.awt.dnd.*; -import java.awt.event.*; +import java.awt.BorderLayout; +import java.awt.Color; +import java.awt.Dimension; +import java.awt.FontMetrics; +import java.awt.Graphics; +import java.awt.GridLayout; +import java.awt.Point; +import java.awt.Rectangle; +import java.awt.Toolkit; +import java.awt.datatransfer.Clipboard; +import java.awt.datatransfer.ClipboardOwner; +import java.awt.datatransfer.DataFlavor; +import java.awt.datatransfer.Transferable; +import java.awt.dnd.DnDConstants; +import java.awt.dnd.DropTargetDragEvent; +import java.awt.dnd.DropTargetDropEvent; +import java.awt.dnd.DropTargetEvent; +import java.awt.dnd.DropTargetListener; +import java.awt.event.ActionEvent; +import java.awt.event.ActionListener; +import java.awt.event.FocusEvent; +import java.awt.event.FocusListener; +import java.awt.event.MouseAdapter; +import java.awt.event.MouseEvent; +import java.awt.event.MouseListener; +import java.awt.event.WindowAdapter; +import java.awt.event.WindowEvent; import java.beans.PropertyChangeEvent; import java.beans.PropertyChangeListener; import java.beans.PropertyVetoException; import java.io.BufferedInputStream; -import java.io.BufferedOutputStream; import java.io.File; import java.io.FileOutputStream; -import java.io.InputStream; import java.lang.reflect.Constructor; import java.net.URL; -import java.net.URLConnection; -import java.nio.channels.ReadableByteChannel; -import java.util.*; - -import javax.swing.*; +import java.util.ArrayList; +import java.util.Hashtable; +import java.util.StringTokenizer; +import java.util.Vector; + +import javax.swing.DefaultDesktopManager; +import javax.swing.DesktopManager; +import javax.swing.JButton; +import javax.swing.JComboBox; +import javax.swing.JComponent; +import javax.swing.JDesktopPane; +import javax.swing.JFrame; +import javax.swing.JInternalFrame; +import javax.swing.JLabel; +import javax.swing.JMenuItem; +import javax.swing.JOptionPane; +import javax.swing.JPanel; +import javax.swing.JPopupMenu; +import javax.swing.JProgressBar; +import javax.swing.SwingUtilities; import javax.swing.event.MenuEvent; import javax.swing.event.MenuListener; @@ -48,15 +88,20 @@ import javax.swing.event.MenuListener; * * * @author $author$ - * @version $Revision$ + * @version $Revision: 1.155 $ */ public class Desktop extends jalview.jbgui.GDesktop implements - DropTargetListener, ClipboardOwner, IProgressIndicator + DropTargetListener, ClipboardOwner, IProgressIndicator, jalview.api.StructureSelectionManagerProvider { private JalviewChangeSupport changeSupport = new JalviewChangeSupport(); /** + * news reader - null if it was never started. + */ + private BlogReader jvnews=null; + + /** * @param listener * @see jalview.gui.JalviewChangeSupport#addJalviewPropertyChangeListener(java.beans.PropertyChangeListener) */ @@ -232,9 +277,13 @@ public class Desktop extends jalview.jbgui.GDesktop implements showMemusage.setSelected(selmemusage); desktop.setBackground(Color.white); getContentPane().setLayout(new BorderLayout()); + // alternate config - have scrollbars - see notes in JAL-153 + //JScrollPane sp = new JScrollPane(); + //sp.getViewport().setView(desktop); + //getContentPane().add(sp, BorderLayout.CENTER); getContentPane().add(desktop, BorderLayout.CENTER); - desktop.setDragMode(JDesktopPane.OUTLINE_DRAG_MODE); - + desktop.setDragMode(JDesktopPane.OUTLINE_DRAG_MODE); + // This line prevents Windows Look&Feel resizing all new windows to maximum // if previous window was maximised desktop.setDesktopManager(new MyDesktopManager( @@ -263,6 +312,21 @@ public class Desktop extends jalview.jbgui.GDesktop implements showConsole(showjconsole); + showNews.setVisible(false); + final Desktop me = this; + // Thread off the news reader, in case there are connection problems. + new Thread( new Runnable() { + @Override + public void run() + { + Cache.log.debug("Starting news thread."); + + jvnews = new BlogReader(me); + showNews.setVisible(true); + Cache.log.debug("Completed news thread."); + } + }).start(); + this.addWindowListener(new WindowAdapter() { public void windowClosing(WindowEvent evt) @@ -281,7 +345,24 @@ public class Desktop extends jalview.jbgui.GDesktop implements } } }); - + this.addFocusListener(new FocusListener() + { + + @Override + public void focusLost(FocusEvent e) + { + // TODO Auto-generated method stub + + } + + @Override + public void focusGained(FocusEvent e) + { + Cache.log.debug("Relaying windows after focus gain"); + // make sure that we sort windows properly after we gain focus + instance.relayerWindows(); + } + }); this.setDropTarget(new java.awt.dnd.DropTarget(desktop, this)); // Spawn a thread that shows the splashscreen SwingUtilities.invokeLater(new Runnable() @@ -324,6 +405,32 @@ public class Desktop extends jalview.jbgui.GDesktop implements }); } + protected void showNews_actionPerformed(ActionEvent e) + { + showNews(showNews.isSelected()); + } + void showNews(boolean visible) + { + { + Cache.log.debug((visible?"Showing":"Hiding")+" news."); + showNews.setSelected(visible); + if (visible && !jvnews.isVisible()) + { + new Thread(new Runnable() { + @Override + public void run() + { + long instance=System.currentTimeMillis(); + Desktop.instance.setProgressBar("Refreshing news", instance); + jvnews.refreshNews(); + Desktop.instance.setProgressBar(null, instance); + jvnews.showNews(); + } + }).start(); + } + } + } + /** * recover the last known dimensions for a jalview window * @@ -631,6 +738,10 @@ public class Desktop extends jalview.jbgui.GDesktop implements } catch (java.beans.PropertyVetoException ve) { } + catch (java.lang.ClassCastException cex) + { + Cache.log.warn("Squashed a possible GUI implementation error. If you can recreate this, please look at http://issues.jalview.org/browse/JAL-869",cex); + } } public void lostOwnership(Clipboard clipboard, Transferable contents) @@ -906,6 +1017,12 @@ public class Desktop extends jalview.jbgui.GDesktop implements storeLastKnownDimensions("JAVA_CONSOLE_", jconsole.getBounds()); jconsole.stopConsole(); } + if (jvnews!=null) + { + storeLastKnownDimensions("JALVIEW_RSS_WINDOW_", jvnews.getBounds()); + + } + System.exit(0); } @@ -938,7 +1055,7 @@ public class Desktop extends jalview.jbgui.GDesktop implements { message.append("\n\n!! Jalview version " + jalview.bin.Cache.getProperty("LATEST_VERSION") - + " is available for download from http://www.jalview.org !!\n"); + + " is available for download from "+jalview.bin.Cache.getDefault("www.jalview.org","http://www.jalview.org")+" !!\n"); } // TODO: update this text for each release or centrally store it for lite @@ -1174,11 +1291,18 @@ public class Desktop extends jalview.jbgui.GDesktop implements if (value == JalviewFileChooser.APPROVE_OPTION) { - java.io.File choice = chooser.getSelectedFile(); + final Desktop me = this; + final java.io.File choice = chooser.getSelectedFile(); + new Thread(new Runnable() + { + public void run() + { + setProgressBar("Saving jalview project " + choice.getName(), choice.hashCode()); jalview.bin.Cache.setProperty("LAST_DIRECTORY", choice.getParent()); // TODO catch and handle errors for savestate + // TODO prevent user from messing with the Desktop whilst we're saving try { new Jalview2XML().SaveState(choice); @@ -1191,12 +1315,13 @@ public class Desktop extends jalview.jbgui.GDesktop implements Cache.log .error("Problems whilst trying to save to " + choice.getName(), ex); - JOptionPane.showMessageDialog(this, + JOptionPane.showMessageDialog(me, "Error whilst saving current state to " + choice.getName(), "Couldn't save project", JOptionPane.WARNING_MESSAGE); } setProgressBar(null, choice.hashCode()); - + } + }).start(); } } @@ -1254,44 +1379,47 @@ public class Desktop extends jalview.jbgui.GDesktop implements } JPanel progressPanel; - + ArrayList fileLoadingPanels=new ArrayList(); public void startLoading(final String fileName) { if (fileLoadingCount == 0) { - addProgressPanel("Loading File: " + fileName + " "); - + fileLoadingPanels.add(addProgressPanel("Loading File: " + fileName + " ")); } fileLoadingCount++; } - private JProgressBar addProgressPanel(String string) + private JPanel addProgressPanel(String string) { if (progressPanel == null) { - progressPanel = new JPanel(new BorderLayout()); + progressPanel = new JPanel(new GridLayout(1,1)); totalProgressCount = 0; + instance.getContentPane().add(progressPanel, BorderLayout.SOUTH); } + JPanel thisprogress=new JPanel(new BorderLayout(10,5)); JProgressBar progressBar = new JProgressBar(); progressBar.setIndeterminate(true); - progressPanel.add(new JLabel(string), BorderLayout.WEST); + thisprogress.add(new JLabel(string), BorderLayout.WEST); - progressPanel.add(progressBar, BorderLayout.CENTER); - - instance.getContentPane().add(progressPanel, BorderLayout.SOUTH); - totalProgressCount++; - validate(); - return progressBar; + thisprogress.add(progressBar, BorderLayout.CENTER); + progressPanel.add(thisprogress); + ((GridLayout)progressPanel.getLayout()).setRows(((GridLayout)progressPanel.getLayout()).getRows()+1); + ++totalProgressCount; + instance.validate(); + return thisprogress; } int totalProgressCount = 0; - private void removeProgressPanel(JProgressBar progbar) + private void removeProgressPanel(JPanel progbar) { if (progressPanel != null) { progressPanel.remove(progbar); + GridLayout gl = (GridLayout) progressPanel.getLayout(); + gl.setRows(gl.getRows()-1); if (--totalProgressCount < 1) { this.getContentPane().remove(progressPanel); @@ -1306,11 +1434,11 @@ public class Desktop extends jalview.jbgui.GDesktop implements fileLoadingCount--; if (fileLoadingCount < 1) { - if (progressPanel != null) + for (JPanel flp : fileLoadingPanels) { - this.getContentPane().remove(progressPanel); - progressPanel = null; + removeProgressPanel(flp); } + fileLoadingPanels.clear(); fileLoadingCount = 0; } validate(); @@ -1757,7 +1885,7 @@ public class Desktop extends jalview.jbgui.GDesktop implements if (value == JalviewFileChooser.APPROVE_OPTION) { java.io.File choice = chooser.getSelectedFile(); - JProgressBar progpanel = addProgressPanel("Saving VAMSAS Document to " + JPanel progpanel = addProgressPanel("Saving VAMSAS Document to " + choice.getName()); jalview.bin.Cache.setProperty("LAST_DIRECTORY", choice.getParent()); String warnmsg = null; @@ -1791,7 +1919,7 @@ public class Desktop extends jalview.jbgui.GDesktop implements } } - JProgressBar vamUpdate = null; + JPanel vamUpdate = null; /** * hide vamsas user gui bits when a vamsas document event is being handled. @@ -1927,6 +2055,14 @@ public class Desktop extends jalview.jbgui.GDesktop implements } + /** + * fixes stacking order after a modal dialog to ensure windows that should be on top actually are + */ + public void relayerWindows() + { + + } + protected JMenuItem groovyShell; public void doGroovyCheck() @@ -2063,7 +2199,8 @@ public class Desktop extends jalview.jbgui.GDesktop implements /** * Progress bars managed by the IProgressIndicator method. */ - private Hashtable progressBars, progressBarHandlers; + private Hashtable progressBars; + private Hashtable progressBarHandlers; /* * (non-Javadoc) @@ -2074,13 +2211,13 @@ public class Desktop extends jalview.jbgui.GDesktop implements { if (progressBars == null) { - progressBars = new Hashtable(); - progressBarHandlers = new Hashtable(); + progressBars = new Hashtable(); + progressBarHandlers = new Hashtable(); } if (progressBars.get(new Long(id)) != null) { - JProgressBar progressPanel = (JProgressBar) progressBars + JPanel progressPanel = progressBars .remove(new Long(id)); if (progressBarHandlers.contains(new Long(id))) { @@ -2201,7 +2338,8 @@ public class Desktop extends jalview.jbgui.GDesktop implements // register PCS handler for desktop. discoverer.addPropertyChangeListener(changeSupport); } - if (Cache.getDefault("SHOW_JWS1_SERVICES", true)) + // JAL-940 - disabled JWS1 service configuration - always start discoverer until we phase out completely + if (true) { (t0 = new Thread(discoverer)).start(); }