X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FDesktop.java;h=d076ba06a9d601da326fe76f71554463a84ea04c;hb=c5e7525fa1ce59385fd3e249c2fe4056f4b5371e;hp=4a8622d0efe613b4f30f29fb19a7921fae29bd22;hpb=633ae27e1786a9e4da2238e75807de3a276dee43;p=jalview.git

diff --git a/src/jalview/gui/Desktop.java b/src/jalview/gui/Desktop.java
index 4a8622d..d076ba0 100644
--- a/src/jalview/gui/Desktop.java
+++ b/src/jalview/gui/Desktop.java
@@ -133,6 +133,12 @@ public class Desktop extends jalview.jbgui.GDesktop implements
 
   private static int DEFAULT_MIN_HEIGHT = 250;
 
+  private static int ALIGN_FRAME_DEFAULT_MIN_WIDTH = 600;
+
+  private static int ALIGN_FRAME_DEFAULT_MIN_HEIGHT = 70;
+
+  private static final String EXPERIMENTAL_FEATURES = "EXPERIMENTAL_FEATURES";
+
   private JalviewChangeSupport changeSupport = new JalviewChangeSupport();
 
   /**
@@ -330,19 +336,6 @@ public class Desktop extends jalview.jbgui.GDesktop implements
     instance = this;
     doVamsasClientCheck();
 
-    groovyShell = new JMenuItem();
-    groovyShell.setText(MessageManager.getString("label.groovy_console"));
-    groovyShell.addActionListener(new ActionListener()
-    {
-      @Override
-      public void actionPerformed(ActionEvent e)
-      {
-        groovyShell_actionPerformed();
-      }
-    });
-    toolsMenu.add(groovyShell);
-    groovyShell.setVisible(true);
-
     doConfigureStructurePrefs();
     setTitle("Jalview " + jalview.bin.Cache.getProperty("VERSION"));
     setDefaultCloseOperation(JFrame.EXIT_ON_CLOSE);
@@ -397,6 +390,8 @@ public class Desktop extends jalview.jbgui.GDesktop implements
     showConsole(showjconsole);
 
     showNews.setVisible(false);
+    
+    experimentalFeatures.setSelected(showExperimental());
 
     getIdentifiersOrgData();
 
@@ -493,6 +488,19 @@ public class Desktop extends jalview.jbgui.GDesktop implements
             });
   }
 
+  /**
+   * Answers true if user preferences to enable experimental features is True
+   * (on), else false
+   * 
+   * @return
+   */
+  public boolean showExperimental()
+  {
+    String experimental = Cache.getDefault(EXPERIMENTAL_FEATURES,
+            Boolean.FALSE.toString());
+    return Boolean.valueOf(experimental).booleanValue();
+  }
+
   public void doConfigureStructurePrefs()
   {
     // configure services
@@ -842,7 +850,19 @@ public class Desktop extends jalview.jbgui.GDesktop implements
     {
       frame.setMinimumSize(new Dimension(DEFAULT_MIN_WIDTH,
               DEFAULT_MIN_HEIGHT));
+
+      // Set default dimension for Alignment Frame window.
+      // The Alignment Frame window could be added from a number of places,
+      // hence,
+      // I did this here in order not to miss out on any Alignment frame.
+      if (frame instanceof AlignFrame)
+      {
+        frame.setMinimumSize(new Dimension(ALIGN_FRAME_DEFAULT_MIN_WIDTH,
+                ALIGN_FRAME_DEFAULT_MIN_HEIGHT));
+      }
     }
+
+
     frame.setVisible(makeVisible);
     frame.setClosable(true);
     frame.setResizable(resizable);
@@ -2502,8 +2522,6 @@ public class Desktop extends jalview.jbgui.GDesktop implements
 
   }
 
-  protected JMenuItem groovyShell;
-
   /**
    * Accessor method to quickly get all the AlignmentFrames loaded.
    * 
@@ -2589,6 +2607,7 @@ public class Desktop extends jalview.jbgui.GDesktop implements
   /**
    * Add Groovy Support to Jalview
    */
+  @Override
   public void groovyShell_actionPerformed()
   {
     try
@@ -3403,4 +3422,14 @@ public class Desktop extends jalview.jbgui.GDesktop implements
       }
     }
   }
+
+  /**
+   * Sets the Preferences property for experimental features to True or False
+   * depending on the state of the controlling menu item
+   */
+  @Override
+  protected void showExperimental_actionPerformed(boolean selected)
+  {
+    Cache.setProperty(EXPERIMENTAL_FEATURES, Boolean.toString(selected));
+  }
 }