X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FFeatureSettings.java;fp=src%2Fjalview%2Fgui%2FFeatureSettings.java;h=bb15b555dacd223d777855ed697ce054af4f3418;hb=3459a8a691cb22508d7067f240b7254e588e77d3;hp=ac04a1f978a267e31c9d5bf20c7df627d46ed28b;hpb=5b27f1062b2203c4c31702e205f4c78e1992063e;p=jalview.git

diff --git a/src/jalview/gui/FeatureSettings.java b/src/jalview/gui/FeatureSettings.java
index ac04a1f..bb15b55 100644
--- a/src/jalview/gui/FeatureSettings.java
+++ b/src/jalview/gui/FeatureSettings.java
@@ -217,6 +217,7 @@ public class FeatureSettings extends JPanel
     transparency.setValue(100 - transparencyAsPercent);
     inConstruction = incon;
   }
+
   /**
    * Constructor
    * 
@@ -457,8 +458,8 @@ public class FeatureSettings extends JPanel
               });
       frame.setLayer(JLayeredPane.PALETTE_LAYER);
     }
-		inConstruction = false;
-	}
+    inConstruction = false;
+  }
 
   /**
    * Sets the state of buttons to show complement features from viewport
@@ -484,16 +485,17 @@ public class FeatureSettings extends JPanel
     change = null;
   }
 
-	/**
-	 * Constructs and shows a popup menu of possible actions on the selected row and
-	 * feature type
-	 * 
-	 * @param rowSelected
-	 * @param type
-	 * @param typeCol
-	 * @param pt
-	 */
-	protected void showPopupMenu(final int rowSelected, final String type, final Object typeCol, final Point pt)
+  /**
+   * Constructs and shows a popup menu of possible actions on the selected row
+   * and feature type
+   * 
+   * @param rowSelected
+   * @param type
+   * @param typeCol
+   * @param pt
+   */
+  protected void showPopupMenu(final int rowSelected, final String type,
+          final Object typeCol, final Point pt)
   {
     JPopupMenu men = new JPopupMenu(MessageManager
             .formatMessage("label.settings_for_param", new String[]
@@ -1201,8 +1203,8 @@ public class FeatureSettings extends JPanel
   }
 
   /**
-   * close ourselves but leave any existing UI handlers (e.g a CDS/Protein tabbed
-   * feature settings dialog) intact
+   * close ourselves but leave any existing UI handlers (e.g a CDS/Protein
+   * tabbed feature settings dialog) intact
    */
   public void closeOldSettings()
   {
@@ -1318,7 +1320,8 @@ public class FeatureSettings extends JPanel
       }
     });
 
-    final String byScoreLabel = MessageManager.getString("label.seq_sort_by_score");
+    final String byScoreLabel = MessageManager
+            .getString("label.seq_sort_by_score");
     JButton sortByScore = new JButton(byScoreLabel);
     sortByScore.setFont(JvSwingUtils.getLabelFont());
     sortByScore.addActionListener(new ActionListener()
@@ -1332,7 +1335,8 @@ public class FeatureSettings extends JPanel
         }
       }
     });
-    final String byDensityLabel = MessageManager.getString("label.sequence_sort_by_density");
+    final String byDensityLabel = MessageManager
+            .getString("label.sequence_sort_by_density");
     JButton sortByDens = new JButton(byDensityLabel);
     sortByDens.setFont(JvSwingUtils.getLabelFont());
     sortByDens.addActionListener(new ActionListener()
@@ -1363,7 +1367,8 @@ public class FeatureSettings extends JPanel
         }
       }
     });
-    // Cancel for a SplitFrame should just revert changes to the currently displayed
+    // Cancel for a SplitFrame should just revert changes to the currently
+    // displayed
     // settings. May want to do this for either or both - so need a splitview
     // feature settings cancel/OK.
     JButton cancel = new JButton(MessageManager
@@ -1453,11 +1458,12 @@ public class FeatureSettings extends JPanel
             MessageManager.getString("label.transparency_tip"));
 
     boolean nucleotide = af.getViewport().getAlignment().isNucleotide();
-    String text = MessageManager.formatMessage("label.show_linked_features",
-            nucleotide
-                    ? MessageManager.getString("label.protein")
-                            .toLowerCase(Locale.ROOT)
-                    : "CDS");
+    String text = MessageManager
+            .formatMessage("label.show_linked_features",
+                    nucleotide
+                            ? MessageManager.getString("label.protein")
+                                    .toLowerCase(Locale.ROOT)
+                            : "CDS");
     showComplement = new JCheckBox(text);
     showComplement.addActionListener(new ActionListener()
     {
@@ -1541,7 +1547,7 @@ public class FeatureSettings extends JPanel
    * 
    * @param fcol
    * @param withHint
-   *                   if true include 'click to edit' and similar text
+   *          if true include 'click to edit' and similar text
    * @return
    */
   public static String getColorTooltip(FeatureColourI fcol,