X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FFeatureSettings.java;h=12f9db982f12800fdbf162bc3fe28eff1b13093d;hb=77b4f2ace6bde7f7c41199e74b3099337384ee4d;hp=63f1b137853a8af84f0f6133616d324222623264;hpb=ad79fcf0705b71f2504b1ed4092d54a8c45ef09f;p=jalview.git

diff --git a/src/jalview/gui/FeatureSettings.java b/src/jalview/gui/FeatureSettings.java
index 63f1b13..12f9db9 100644
--- a/src/jalview/gui/FeatureSettings.java
+++ b/src/jalview/gui/FeatureSettings.java
@@ -541,13 +541,8 @@ public class FeatureSettings extends JPanel
       public void itemStateChanged(ItemEvent evt)
       {
         fr.setGroupVisibility(check.getText(), check.isSelected());
-        af.alignPanel.getSeqPanel().seqCanvas.repaint();
-        if (af.alignPanel.overviewPanel != null)
-        {
-          af.alignPanel.overviewPanel.updateOverviewImage();
-        }
-
         resetTable(new String[] { grp });
+        af.alignPanel.paintAlignment(true, true);
       }
     });
     groupPanel.add(check);
@@ -966,12 +961,13 @@ public class FeatureSettings extends JPanel
 
   public void invertSelection()
   {
-    for (int i = 0; i < table.getRowCount(); i++)
+    Object[][] data = ((FeatureTableModel) table.getModel()).getData();
+    for (int i = 0; i < data.length; i++)
     {
-      Boolean value = (Boolean) table.getValueAt(i, 2);
-
-      table.setValueAt(new Boolean(!value.booleanValue()), i, 2);
+      data[i][2] = !(Boolean) data[i][2];
     }
+    updateFeatureRenderer(data, true);
+    table.repaint();
   }
 
   public void orderByAvWidth()
@@ -1064,7 +1060,7 @@ public class FeatureSettings extends JPanel
   {
     if (fr.setFeaturePriority(data, visibleNew))
     {
-      af.alignPanel.paintAlignment(true);
+      af.alignPanel.paintAlignment(true, true);
     }
   }
 
@@ -1246,7 +1242,7 @@ public class FeatureSettings extends JPanel
         if (!inConstruction)
         {
           fr.setTransparency((100 - transparency.getValue()) / 100f);
-          af.alignPanel.paintAlignment(true);
+          af.alignPanel.paintAlignment(true,true);
         }
       }
     });