X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FFeatureSettings.java;h=12f9db982f12800fdbf162bc3fe28eff1b13093d;hb=77b4f2ace6bde7f7c41199e74b3099337384ee4d;hp=c5454abaa0fc686d3de07330f41d42a3dc4cb70c;hpb=106a3890f956e2aa7780b2985f4326655912a558;p=jalview.git

diff --git a/src/jalview/gui/FeatureSettings.java b/src/jalview/gui/FeatureSettings.java
index c5454ab..12f9db9 100644
--- a/src/jalview/gui/FeatureSettings.java
+++ b/src/jalview/gui/FeatureSettings.java
@@ -131,6 +131,11 @@ public class FeatureSettings extends JPanel
   private static final int MIN_WIDTH = 400;
 
   private static final int MIN_HEIGHT = 400;
+  
+  /**
+   * when true, constructor is still executing - so ignore UI events
+   */
+  protected volatile boolean inConstruction = true;
 
   /**
    * Constructor
@@ -303,6 +308,7 @@ public class FeatureSettings extends JPanel
               };
             });
     frame.setLayer(JLayeredPane.PALETTE_LAYER);
+    inConstruction = false;
   }
 
   protected void popupSort(final int selectedRow, final String type,
@@ -535,13 +541,8 @@ public class FeatureSettings extends JPanel
       public void itemStateChanged(ItemEvent evt)
       {
         fr.setGroupVisibility(check.getText(), check.isSelected());
-        af.alignPanel.getSeqPanel().seqCanvas.repaint();
-        if (af.alignPanel.overviewPanel != null)
-        {
-          af.alignPanel.overviewPanel.updateOverviewImage();
-        }
-
         resetTable(new String[] { grp });
+        af.alignPanel.paintAlignment(true, true);
       }
     });
     groupPanel.add(check);
@@ -960,12 +961,13 @@ public class FeatureSettings extends JPanel
 
   public void invertSelection()
   {
-    for (int i = 0; i < table.getRowCount(); i++)
+    Object[][] data = ((FeatureTableModel) table.getModel()).getData();
+    for (int i = 0; i < data.length; i++)
     {
-      Boolean value = (Boolean) table.getValueAt(i, 2);
-
-      table.setValueAt(new Boolean(!value.booleanValue()), i, 2);
+      data[i][2] = !(Boolean) data[i][2];
     }
+    updateFeatureRenderer(data, true);
+    table.repaint();
   }
 
   public void orderByAvWidth()
@@ -1237,8 +1239,11 @@ public class FeatureSettings extends JPanel
       @Override
       public void stateChanged(ChangeEvent evt)
       {
-        fr.setTransparency((100 - transparency.getValue()) / 100f);
-        af.alignPanel.paintAlignment(true, true);
+        if (!inConstruction)
+        {
+          fr.setTransparency((100 - transparency.getValue()) / 100f);
+          af.alignPanel.paintAlignment(true,true);
+        }
       }
     });