X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FFeatureSettings.java;h=6b58b512d3788a94753ed37a9b63dc7453d372fc;hb=4d7f98a6dd54d9863ba449ec79dcd95d25ed863d;hp=940a216e5aee502f9d394d4571cd9d40379845be;hpb=7ec8c23d92c88099a6378cc60e896e4c90ada5e7;p=jalview.git

diff --git a/src/jalview/gui/FeatureSettings.java b/src/jalview/gui/FeatureSettings.java
index 940a216..6b58b51 100644
--- a/src/jalview/gui/FeatureSettings.java
+++ b/src/jalview/gui/FeatureSettings.java
@@ -125,7 +125,8 @@ public class FeatureSettings extends JPanel implements
     this.af = af;
     fr = af.getFeatureRenderer();
     // allow transparency to be recovered
-    transparency.setMaximum(100 - (int) ((originalTransparency=fr.getTransparency()) * 100));
+    transparency.setMaximum(100 - (int) ((originalTransparency = fr
+            .getTransparency()) * 100));
 
     try
     {
@@ -135,15 +136,18 @@ public class FeatureSettings extends JPanel implements
       ex.printStackTrace();
     }
 
-    table = new JTable() {
+    table = new JTable()
+    {
       @Override
-      public String getToolTipText(MouseEvent e) {
-        if (table.columnAtPoint(e.getPoint()) == 0) {
+      public String getToolTipText(MouseEvent e)
+      {
+        if (table.columnAtPoint(e.getPoint()) == 0)
+        {
           /*
            * Tooltip for feature name only
            */
-          return JvSwingUtils.wrapTooltip(true,
-                MessageManager.getString("label.feature_settings_click_drag"));
+          return JvSwingUtils.wrapTooltip(true, MessageManager
+                  .getString("label.feature_settings_click_drag"));
         }
         return null;
       }
@@ -187,8 +191,7 @@ public class FeatureSettings extends JPanel implements
         {
           popupSort(selectedRow, (String) table.getValueAt(selectedRow, 0),
                   table.getValueAt(selectedRow, 1), fr.getMinMax(),
-                  evt.getX(),
-                  evt.getY());
+                  evt.getX(), evt.getY());
         }
       }
     });
@@ -217,8 +220,8 @@ public class FeatureSettings extends JPanel implements
         }
       }
     });
-//    table.setToolTipText(JvSwingUtils.wrapTooltip(true,
-//            MessageManager.getString("label.feature_settings_click_drag")));
+    // table.setToolTipText(JvSwingUtils.wrapTooltip(true,
+    // MessageManager.getString("label.feature_settings_click_drag")));
     scrollPane.setViewportView(table);
 
     dassourceBrowser = new DasSourceBrowser(this);
@@ -278,8 +281,7 @@ public class FeatureSettings extends JPanel implements
           final Object typeCol, final Hashtable minmax, int x, int y)
   {
     JPopupMenu men = new JPopupMenu(MessageManager.formatMessage(
-            "label.settings_for_param", new String[]
-            { type }));
+            "label.settings_for_param", new String[] { type }));
     JMenuItem scr = new JMenuItem(
             MessageManager.getString("label.sort_by_score"));
     men.add(scr);
@@ -289,8 +291,7 @@ public class FeatureSettings extends JPanel implements
 
       public void actionPerformed(ActionEvent e)
       {
-        me.af.avc.sortAlignmentByFeatureScore(new String[]
-        { type });
+        me.af.avc.sortAlignmentByFeatureScore(new String[] { type });
       }
 
     });
@@ -301,8 +302,7 @@ public class FeatureSettings extends JPanel implements
 
       public void actionPerformed(ActionEvent e)
       {
-        me.af.avc.sortAlignmentByFeatureDensity(new String[]
-        { type });
+        me.af.avc.sortAlignmentByFeatureDensity(new String[] { type });
       }
 
     });
@@ -516,8 +516,7 @@ public class FeatureSettings extends JPanel implements
           af.alignPanel.overviewPanel.updateOverviewImage();
         }
 
-        resetTable(new String[]
-        { grp });
+        resetTable(new String[] { grp });
       }
     });
     groupPanel.add(check);
@@ -705,11 +704,13 @@ public class FeatureSettings extends JPanel implements
   void load()
   {
     JalviewFileChooser chooser = new JalviewFileChooser(
-            jalview.bin.Cache.getProperty("LAST_DIRECTORY"), new String[]
-            { "fc" }, new String[]
-            { "Sequence Feature Colours" }, "Sequence Feature Colours");
+            jalview.bin.Cache.getProperty("LAST_DIRECTORY"),
+            new String[] { "fc" },
+            new String[] { "Sequence Feature Colours" },
+            "Sequence Feature Colours");
     chooser.setFileView(new jalview.io.JalviewFileView());
-    chooser.setDialogTitle(MessageManager.getString("label.load_feature_colours"));
+    chooser.setDialogTitle(MessageManager
+            .getString("label.load_feature_colours"));
     chooser.setToolTipText(MessageManager.getString("action.load"));
 
     int value = chooser.showOpenDialog(this);
@@ -724,8 +725,7 @@ public class FeatureSettings extends JPanel implements
                 file), "UTF-8");
 
         jalview.schemabinding.version2.JalviewUserColours jucs = new jalview.schemabinding.version2.JalviewUserColours();
-        jucs = jucs
-                .unmarshal(in);
+        jucs = jucs.unmarshal(in);
 
         for (int i = jucs.getColourCount() - 1; i >= 0; i--)
         {
@@ -803,11 +803,13 @@ public class FeatureSettings extends JPanel implements
   void save()
   {
     JalviewFileChooser chooser = new JalviewFileChooser(
-            jalview.bin.Cache.getProperty("LAST_DIRECTORY"), new String[]
-            { "fc" }, new String[]
-            { "Sequence Feature Colours" }, "Sequence Feature Colours");
+            jalview.bin.Cache.getProperty("LAST_DIRECTORY"),
+            new String[] { "fc" },
+            new String[] { "Sequence Feature Colours" },
+            "Sequence Feature Colours");
     chooser.setFileView(new jalview.io.JalviewFileView());
-    chooser.setDialogTitle(MessageManager.getString("label.save_feature_colours"));
+    chooser.setDialogTitle(MessageManager
+            .getString("label.save_feature_colours"));
     chooser.setToolTipText(MessageManager.getString("action.save"));
 
     int value = chooser.showSaveDialog(this);
@@ -942,9 +944,9 @@ public class FeatureSettings extends JPanel implements
       }
     }
     if (sort)
-     {
+    {
       jalview.util.QuickSort.sort(width, data);
-    // update global priority order
+      // update global priority order
     }
 
     updateFeatureRenderer(data, false);
@@ -1169,8 +1171,10 @@ public class FeatureSettings extends JPanel implements
       }
     });
     this.add(tabbedPane, java.awt.BorderLayout.CENTER);
-    tabbedPane.addTab(MessageManager.getString("label.feature_settings"), settingsPane);
-    tabbedPane.addTab(MessageManager.getString("label.das_settings"), dasSettingsPane);
+    tabbedPane.addTab(MessageManager.getString("label.feature_settings"),
+            settingsPane);
+    tabbedPane.addTab(MessageManager.getString("label.das_settings"),
+            dasSettingsPane);
     bigPanel.add(transPanel, java.awt.BorderLayout.SOUTH);
     transbuttons.add(optimizeOrder);
     transbuttons.add(invert);
@@ -1364,8 +1368,10 @@ public class FeatureSettings extends JPanel implements
       this.data = data;
     }
 
-    private String[] columnNames =
-    { MessageManager.getString("label.feature_type"), MessageManager.getString("action.colour"), MessageManager.getString("label.display") };
+    private String[] columnNames = {
+        MessageManager.getString("label.feature_type"),
+        MessageManager.getString("action.colour"),
+        MessageManager.getString("label.display") };
 
     private Object[][] data;