X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FFeatureSettings.java;h=7c95ed78e19dd96e5aa029bfcd0292b057dcd16d;hb=0ad0cc7fe1de5c299363b0dc9b4b032d5d199275;hp=3979ebecf3af9e9e09bdfa72d3aeb7c894bef6cf;hpb=391968dd70ca76090306df9b5852bbef10ab4ede;p=jalview.git

diff --git a/src/jalview/gui/FeatureSettings.java b/src/jalview/gui/FeatureSettings.java
index 3979ebe..7c95ed7 100755
--- a/src/jalview/gui/FeatureSettings.java
+++ b/src/jalview/gui/FeatureSettings.java
@@ -231,10 +231,10 @@ public class FeatureSettings extends JPanel
       type = en.nextElement().toString();
       Color col = fr.getColour(type);
 
-
       //This will ignore any features which are in groups not shown
-     if(fr.featureGroups==null
-           ||   ((Boolean)fr.featureGroups.get(allFeatures.get(type))).booleanValue())
+     Object visibleGroup =  fr.featureGroups.get(allFeatures.get(type));
+     if(visibleGroup == null
+           || ((Boolean)(visibleGroup)).booleanValue())
       {
         tmp[tmpIndex][0] = type;
         tmp[tmpIndex][1] = col;