X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FFeatureSettings.java;h=a3a23964579116ad01f4bb1881014106f729d703;hb=ad35f232acd499d9457056ca24b663866a09edd2;hp=0398c710bd70f968fa4b36d43d5ba07033709d66;hpb=00fac2b7864f28867a1bb4c5f8ccb60c225d80a9;p=jalview.git

diff --git a/src/jalview/gui/FeatureSettings.java b/src/jalview/gui/FeatureSettings.java
index 0398c71..a3a2396 100755
--- a/src/jalview/gui/FeatureSettings.java
+++ b/src/jalview/gui/FeatureSettings.java
@@ -1,6 +1,6 @@
 /*
  * Jalview - A Sequence Alignment Editor and Viewer
- * Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
+ * Copyright (C) 2006 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
  *
  * This program is free software; you can redistribute it and/or
  * modify it under the terms of the GNU General Public License
@@ -35,11 +35,12 @@ import java.awt.Color;
 public class FeatureSettings extends JPanel
 {
   DasSourceBrowser dassourceBrowser;
+  jalview.io.DasSequenceFeatureFetcher dasFeatureFetcher;
   JPanel settingsPane = new JPanel();
   JPanel dasSettingsPane = new JPanel();
 
   final FeatureRenderer fr;
-  final AlignFrame af;
+  public final AlignFrame af;
   Object [][] originalData;
   final JInternalFrame frame;
   JScrollPane scrollPane = new JScrollPane();
@@ -217,8 +218,8 @@ public class FeatureSettings extends JPanel
   }
 
      resetTable(false);
-     if (groupPanel != null)
-       groupPanel.validate();
+
+     validate();
   }
 
 
@@ -293,6 +294,13 @@ public class FeatureSettings extends JPanel
       data[dataIndex][0] = type;
 
       data[dataIndex][1] = fr.getColour(type);
+      if (data[dataIndex][1] == null)
+      {
+        //"Colour has been updated in another view!!"
+        fr.renderOrder = null;
+        return;
+      }
+
       data[dataIndex][2] = new Boolean(true);
       dataIndex++;
     }
@@ -450,6 +458,7 @@ public class FeatureSettings extends JPanel
   JPanel dasButtonPanel = new JPanel();
   JButton fetchDAS = new JButton();
   JButton saveDAS = new JButton();
+  JButton cancelDAS = new JButton();
   private void jbInit()
       throws Exception
   {
@@ -532,8 +541,17 @@ public class FeatureSettings extends JPanel
     });
     dasButtonPanel.setBorder(BorderFactory.createEtchedBorder());
     dasSettingsPane.setBorder(null);
+    cancelDAS.setEnabled(false);
+    cancelDAS.setText("Cancel Fetch");
+    cancelDAS.addActionListener(new ActionListener()
+    {
+      public void actionPerformed(ActionEvent e)
+      {
+        cancelDAS_actionPerformed(e);
+      }
+    });
     this.add(tabbedPane, java.awt.BorderLayout.CENTER);
-    tabbedPane.addTab("Display Settings", settingsPane );
+    tabbedPane.addTab("Feature Settings", settingsPane );
     tabbedPane.addTab("DAS Settings", dasSettingsPane);
     bigPanel.add(transPanel, java.awt.BorderLayout.SOUTH);
     transPanel.add(transparency);
@@ -545,6 +563,7 @@ public class FeatureSettings extends JPanel
     bigPanel.add(scrollPane, java.awt.BorderLayout.CENTER);
     dasSettingsPane.add(dasButtonPanel, java.awt.BorderLayout.SOUTH);
     dasButtonPanel.add(fetchDAS);
+    dasButtonPanel.add(cancelDAS);
     dasButtonPanel.add(saveDAS);
     settingsPane.add(bigPanel, java.awt.BorderLayout.CENTER);
     settingsPane.add(buttonPanel, java.awt.BorderLayout.SOUTH);
@@ -552,15 +571,17 @@ public class FeatureSettings extends JPanel
 
   public void fetchDAS_actionPerformed(ActionEvent e)
   {
+    fetchDAS.setEnabled(false);
+    cancelDAS.setEnabled(true);
     Vector selectedSources = dassourceBrowser.getSelectedSources();
 
     SequenceI [] dataset, seqs ;
     int iSize;
 
     if(af.getViewport().getSelectionGroup()!=null
-      && af.getViewport().getSelectionGroup().getSize(false)>0)
+      && af.getViewport().getSelectionGroup().getSize()>0)
     {
-      iSize = af.getViewport().getSelectionGroup().getSize(false);
+      iSize = af.getViewport().getSelectionGroup().getSize();
       dataset = new SequenceI[iSize];
       seqs = af.getViewport().getSelectionGroup().
           getSequencesInOrder(
@@ -578,9 +599,10 @@ public class FeatureSettings extends JPanel
       dataset[i] = seqs[i].getDatasetSequence();
     }
 
-    new jalview.io.DasSequenceFeatureFetcher(
+    dasFeatureFetcher =
+        new jalview.io.DasSequenceFeatureFetcher(
         dataset,
-        af,
+        this,
         selectedSources);
 
     af.getViewport().setShowSequenceFeatures(true);
@@ -592,6 +614,19 @@ public class FeatureSettings extends JPanel
     dassourceBrowser.saveProperties(jalview.bin.Cache.applicationProperties);
   }
 
+  public void complete()
+  {
+    fetchDAS.setEnabled(true);
+    cancelDAS.setEnabled(false);
+  }
+
+  public void cancelDAS_actionPerformed(ActionEvent e)
+  {
+    dasFeatureFetcher.cancel();
+    fetchDAS.setEnabled(true);
+    cancelDAS.setEnabled(false);
+  }
+
   /////////////////////////////////////////////////////////////////////////
   // http://java.sun.com/docs/books/tutorial/uiswing/components/table.html
   /////////////////////////////////////////////////////////////////////////