X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FFeatureSettings.java;h=bd74db5a5451e6e81d1812793c84119866bf24b6;hb=be762d8d9c71a7aa3121e845c45911c7192b7827;hp=45b6b0d850b50fa485f94667ba1743183837b1ea;hpb=d1bb7a31fc091606aedbc255a5766ac79e36fa91;p=jalview.git diff --git a/src/jalview/gui/FeatureSettings.java b/src/jalview/gui/FeatureSettings.java index 45b6b0d..bd74db5 100644 --- a/src/jalview/gui/FeatureSettings.java +++ b/src/jalview/gui/FeatureSettings.java @@ -97,8 +97,8 @@ import javax.swing.table.AbstractTableModel; import javax.swing.table.TableCellEditor; import javax.swing.table.TableCellRenderer; -public class FeatureSettings extends JPanel implements - FeatureSettingsControllerI +public class FeatureSettings extends JPanel + implements FeatureSettingsControllerI { DasSourceBrowser dassourceBrowser; @@ -142,8 +142,8 @@ public class FeatureSettings extends JPanel implements this.af = af; fr = af.getFeatureRenderer(); // allow transparency to be recovered - transparency.setMaximum(100 - (int) ((originalTransparency = fr - .getTransparency()) * 100)); + transparency.setMaximum(100 + - (int) ((originalTransparency = fr.getTransparency()) * 100)); try { @@ -291,16 +291,17 @@ public class FeatureSettings extends JPanel implements } frame.setMinimumSize(new Dimension(MIN_WIDTH, MIN_HEIGHT)); - frame.addInternalFrameListener(new javax.swing.event.InternalFrameAdapter() - { - @Override - public void internalFrameClosed( - javax.swing.event.InternalFrameEvent evt) - { - fr.removePropertyChangeListener(change); - dassourceBrowser.fs = null; - }; - }); + frame.addInternalFrameListener( + new javax.swing.event.InternalFrameAdapter() + { + @Override + public void internalFrameClosed( + javax.swing.event.InternalFrameEvent evt) + { + fr.removePropertyChangeListener(change); + dassourceBrowser.fs = null; + }; + }); frame.setLayer(JLayeredPane.PALETTE_LAYER); } @@ -310,8 +311,9 @@ public class FeatureSettings extends JPanel implements { final FeatureColourI featureColour = (FeatureColourI) typeCol; - JPopupMenu men = new JPopupMenu(MessageManager.formatMessage( - "label.settings_for_param", new String[] { type })); + JPopupMenu men = new JPopupMenu(MessageManager + .formatMessage("label.settings_for_param", new String[] + { type })); JMenuItem scr = new JMenuItem( MessageManager.getString("label.sort_by_score")); men.add(scr); @@ -322,8 +324,9 @@ public class FeatureSettings extends JPanel implements @Override public void actionPerformed(ActionEvent e) { - me.af.avc.sortAlignmentByFeatureScore(Arrays - .asList(new String[] { type })); + me.af.avc + .sortAlignmentByFeatureScore(Arrays.asList(new String[] + { type })); } }); @@ -335,8 +338,9 @@ public class FeatureSettings extends JPanel implements @Override public void actionPerformed(ActionEvent e) { - me.af.avc.sortAlignmentByFeatureDensity(Arrays - .asList(new String[] { type })); + me.af.avc + .sortAlignmentByFeatureDensity(Arrays.asList(new String[] + { type })); } }); @@ -406,8 +410,7 @@ public class FeatureSettings extends JPanel implements else { // probably the color chooser! - table.setValueAt( - new FeatureColour(colorChooser.getColor()), + table.setValueAt(new FeatureColour(colorChooser.getColor()), selectedRow, 1); table.validate(); me.updateFeatureRenderer( @@ -431,8 +434,8 @@ public class FeatureSettings extends JPanel implements false, type); } }); - JMenuItem clearCols = new JMenuItem( - MessageManager.getString("label.select_columns_not_containing")); + JMenuItem clearCols = new JMenuItem(MessageManager + .getString("label.select_columns_not_containing")); clearCols.addActionListener(new ActionListener() { @Override @@ -633,8 +636,8 @@ public class FeatureSettings extends JPanel implements data[dataIndex][0] = type; data[dataIndex][1] = fr.getFeatureStyle(type); - data[dataIndex][2] = new Boolean(af.getViewport() - .getFeaturesDisplayed().isVisible(type)); + data[dataIndex][2] = new Boolean( + af.getViewport().getFeaturesDisplayed().isVisible(type)); dataIndex++; displayableTypes.remove(type); } @@ -678,8 +681,8 @@ public class FeatureSettings extends JPanel implements table.setModel(new FeatureTableModel(data)); table.getColumnModel().getColumn(0).setPreferredWidth(200); - groupPanel.setLayout(new GridLayout(fr.getFeatureGroupsSize() / 4 + 1, - 4)); + groupPanel.setLayout( + new GridLayout(fr.getFeatureGroupsSize() / 4 + 1, 4)); pruneGroups(foundGroups); groupPanel.validate(); @@ -800,8 +803,8 @@ public class FeatureSettings extends JPanel implements JalviewFileChooser chooser = new JalviewFileChooser("fc", "Sequence Feature Colours"); chooser.setFileView(new JalviewFileView()); - chooser.setDialogTitle(MessageManager - .getString("label.load_feature_colours")); + chooser.setDialogTitle( + MessageManager.getString("label.load_feature_colours")); chooser.setToolTipText(MessageManager.getString("action.load")); int value = chooser.showOpenDialog(this); @@ -812,8 +815,8 @@ public class FeatureSettings extends JPanel implements try { - InputStreamReader in = new InputStreamReader(new FileInputStream( - file), "UTF-8"); + InputStreamReader in = new InputStreamReader( + new FileInputStream(file), "UTF-8"); JalviewUserColours jucs = JalviewUserColours.unmarshal(in); @@ -892,8 +895,8 @@ public class FeatureSettings extends JPanel implements JalviewFileChooser chooser = new JalviewFileChooser("fc", "Sequence Feature Colours"); chooser.setFileView(new JalviewFileView()); - chooser.setDialogTitle(MessageManager - .getString("label.save_feature_colours")); + chooser.setDialogTitle( + MessageManager.getString("label.save_feature_colours")); chooser.setToolTipText(MessageManager.getString("action.save")); int value = chooser.showSaveDialog(this); @@ -935,13 +938,13 @@ public class FeatureSettings extends JPanel implements col.setRGB(Format.getHexString(fcol.getMaxColour())); col.setMin(fcol.getMin()); col.setMax(fcol.getMax()); - col.setMinRGB(jalview.util.Format.getHexString(fcol - .getMinColour())); + col.setMinRGB( + jalview.util.Format.getHexString(fcol.getMinColour())); col.setAutoScale(fcol.isAutoScaled()); col.setThreshold(fcol.getThreshold()); col.setColourByLabel(fcol.isColourByLabel()); - col.setThreshType(fcol.isAboveThreshold() ? "ABOVE" : (fcol - .isBelowThreshold() ? "BELOW" : "NONE")); + col.setThreshType(fcol.isAboveThreshold() ? "ABOVE" + : (fcol.isBelowThreshold() ? "BELOW" : "NONE")); } ucs.addColour(col); } @@ -1144,8 +1147,8 @@ public class FeatureSettings extends JPanel implements } }); sortByDens.setFont(JvSwingUtils.getLabelFont()); - sortByDens.setText(MessageManager - .getString("label.sequence_sort_by_density")); + sortByDens.setText( + MessageManager.getString("label.sequence_sort_by_density")); sortByDens.addActionListener(new ActionListener() { @Override @@ -1239,8 +1242,8 @@ public class FeatureSettings extends JPanel implements }); transparency.setMaximum(70); - transparency.setToolTipText(MessageManager - .getString("label.transparency_tip")); + transparency.setToolTipText( + MessageManager.getString("label.transparency_tip")); fetchDAS.setText(MessageManager.getString("label.fetch_das_features")); fetchDAS.addActionListener(new ActionListener() { @@ -1450,15 +1453,10 @@ public class FeatureSettings extends JPanel implements public void noDasSourceActive() { complete(); - JvOptionPane - .showInternalConfirmDialog( - Desktop.desktop, - MessageManager - .getString("label.no_das_sources_selected_warn"), - MessageManager - .getString("label.no_das_sources_selected_title"), - JvOptionPane.DEFAULT_OPTION, - JvOptionPane.INFORMATION_MESSAGE); + JvOptionPane.showInternalConfirmDialog(Desktop.desktop, + MessageManager.getString("label.no_das_sources_selected_warn"), + MessageManager.getString("label.no_das_sources_selected_title"), + JvOptionPane.DEFAULT_OPTION, JvOptionPane.INFORMATION_MESSAGE); } // /////////////////////////////////////////////////////////////////////// @@ -1555,9 +1553,8 @@ public class FeatureSettings extends JPanel implements } @Override - public Component getTableCellRendererComponent(JTable tbl, - Object color, boolean isSelected, boolean hasFocus, int row, - int column) + public Component getTableCellRendererComponent(JTable tbl, Object color, + boolean isSelected, boolean hasFocus, int row, int column) { FeatureColourI cellColour = (FeatureColourI) color; // JLabel comp = new JLabel(); @@ -1765,8 +1762,8 @@ class FeatureIcon implements Icon } } -class ColorEditor extends AbstractCellEditor implements TableCellEditor, - ActionListener +class ColorEditor extends AbstractCellEditor + implements TableCellEditor, ActionListener { FeatureSettings me;