X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FFinder.java;h=0d35add5690122168860bb4235f6f86c17538ef8;hb=2dc113b7f55163a5948375d6965f428276a57593;hp=e44c95605a56c1ab9704d800359b49d967d4f5d2;hpb=b59839dfda0a767318fc3c89d9604c39ff298d83;p=jalview.git diff --git a/src/jalview/gui/Finder.java b/src/jalview/gui/Finder.java index e44c956..0d35add 100755 --- a/src/jalview/gui/Finder.java +++ b/src/jalview/gui/Finder.java @@ -31,6 +31,8 @@ import jalview.viewmodel.AlignmentViewport; import java.awt.Dimension; import java.awt.event.ActionEvent; import java.awt.event.KeyEvent; +import java.util.ArrayList; +import java.util.List; import java.util.Vector; import java.util.regex.Pattern; import java.util.regex.PatternSyntaxException; @@ -40,6 +42,7 @@ import javax.swing.JComponent; import javax.swing.JInternalFrame; import javax.swing.JLayeredPane; import javax.swing.KeyStroke; +import javax.swing.event.InternalFrameEvent; /** * Performs the menu option for searching the alignment, for the next or all @@ -54,9 +57,9 @@ import javax.swing.KeyStroke; */ public class Finder extends GFinder { - private static final int HEIGHT = 120; + private static final int MY_HEIGHT = 120; - private static final int WIDTH = 400; + private static final int MY_WIDTH = 400; AlignmentViewport av; @@ -98,11 +101,20 @@ public class Finder extends GFinder frame = new JInternalFrame(); frame.setContentPane(this); frame.setLayer(JLayeredPane.PALETTE_LAYER); + frame.addInternalFrameListener( + new javax.swing.event.InternalFrameAdapter() + { + @Override + public void internalFrameClosing(InternalFrameEvent e) + { + closeAction(); + } + }); addEscapeHandler(); Desktop.addInternalFrame(frame, MessageManager.getString("label.find"), - WIDTH, HEIGHT); + MY_WIDTH, MY_HEIGHT); frame.setMinimumSize(new Dimension(MIN_WIDTH, MIN_HEIGHT)); - textfield.requestFocus(); + searchBox.getComponent().requestFocus(); } /** @@ -110,28 +122,19 @@ public class Finder extends GFinder */ private void addEscapeHandler() { - getRootPane().getInputMap(JComponent.WHEN_IN_FOCUSED_WINDOW).put( - KeyStroke.getKeyStroke(KeyEvent.VK_ESCAPE, 0), "Cancel"); + getRootPane().getInputMap(JComponent.WHEN_IN_FOCUSED_WINDOW) + .put(KeyStroke.getKeyStroke(KeyEvent.VK_ESCAPE, 0), "Cancel"); getRootPane().getActionMap().put("Cancel", new AbstractAction() { @Override public void actionPerformed(ActionEvent e) { - escapeActionPerformed(); + closeAction(); } }); } /** - * Close the panel on Escape key press - */ - protected void escapeActionPerformed() - { - setVisible(false); - frame.dispose(); - } - - /** * Performs the 'Find Next' action. * * @param e @@ -189,11 +192,11 @@ public class Finder extends GFinder JInternalFrame[] frames = Desktop.desktop.getAllFrames(); for (int f = 0; f < frames.length; f++) { - JInternalFrame frame = frames[f]; - if (frame != null && frame instanceof AlignFrame) + JInternalFrame alignFrame = frames[f]; + if (alignFrame != null && alignFrame instanceof AlignFrame) { - av = ((AlignFrame) frame).viewport; - ap = ((AlignFrame) frame).alignPanel; + av = ((AlignFrame) alignFrame).viewport; + ap = ((AlignFrame) alignFrame).alignPanel; return true; } } @@ -201,49 +204,47 @@ public class Finder extends GFinder } /** - * DOCUMENT ME! - * - * @param e - * DOCUMENT ME! + * Opens a dialog that allows the user to create sequence features for the + * find match results */ @Override - public void createNewGroup_actionPerformed(ActionEvent e) + public void createFeatures_actionPerformed() { - SequenceI[] seqs = new SequenceI[searchResults.getSize()]; - SequenceFeature[] features = new SequenceFeature[searchResults - .getSize()]; - - int i = 0; - for (SearchResultMatchI match : searchResults.getResults()) + if (searchResults.isEmpty()) { - seqs[i] = match.getSequence().getDatasetSequence(); - - features[i] = new SequenceFeature(textfield.getText().trim(), - "Search Results", null, match.getStart(), match.getEnd(), - "Search Results"); - i++; + return; // shouldn't happen } + List seqs = new ArrayList(); + List features = new ArrayList(); + + String searchString = searchBox.getUserInput(); + String desc = "Search Results"; - if (ap.getSeqPanel().seqCanvas.getFeatureRenderer().amendFeatures(seqs, - features, true, ap)) + /* + * assemble dataset sequences, and template new sequence features, + * for the amend features dialog + */ + for (SearchResultMatchI match : searchResults.getResults()) { - ap.alignFrame.showSeqFeatures.setSelected(true); - av.setShowSequenceFeatures(true); - ap.highlightSearchResults(null); + seqs.add(match.getSequence().getDatasetSequence()); + features.add(new SequenceFeature(searchString, desc, match.getStart(), + match.getEnd(), desc)); } + + new FeatureEditor(ap, seqs, features, true).showDialog(); } /** * Search the alignment for the next or all matches. If 'all matches', a * dialog is shown with the number of sequence ids and subsequences matched. * - * @param findAll + * @param doFindAll */ - void doSearch(boolean findAll) + void doSearch(boolean doFindAll) { - createNewGroup.setEnabled(false); + createFeatures.setEnabled(false); - String searchString = textfield.getText().trim(); + String searchString = searchBox.getUserInput(); if (isInvalidSearchString(searchString)) { @@ -258,7 +259,7 @@ public class Finder extends GFinder finder.setCaseSensitive(caseSensitive.isSelected()); finder.setIncludeDescription(searchDescription.isSelected()); - finder.setFindAll(findAll); + finder.setFindAll(doFindAll); finder.find(searchString); // returns true if anything was actually found @@ -283,13 +284,15 @@ public class Finder extends GFinder if (searchResults.getSize() > 0) { haveResults = true; - createNewGroup.setEnabled(true); + createFeatures.setEnabled(true); } else { searchResults = null; } + searchBox.updateCache(); + // if allResults is null, this effectively switches displaySearch flag in // seqCanvas ap.highlightSearchResults(searchResults); @@ -297,19 +300,19 @@ public class Finder extends GFinder // 'SelectRegion' selection if (!haveResults) { - JvOptionPane.showInternalMessageDialog(this, - MessageManager.getString("label.finished_searching"), null, - JvOptionPane.INFORMATION_MESSAGE); resIndex = -1; seqIndex = 0; + JvOptionPane.showInternalMessageDialog(this, + MessageManager.getString("label.finished_searching"), null, + JvOptionPane.PLAIN_MESSAGE); } else { - if (findAll) + if (doFindAll) { // then we report the matches that were found - String message = (idMatch.size() > 0) ? "" + idMatch.size() - + " IDs" : ""; + String message = (idMatch.size() > 0) ? "" + idMatch.size() + " IDs" + : ""; if (searchResults != null) { if (idMatch.size() > 0 && searchResults.getSize() > 0) @@ -319,13 +322,12 @@ public class Finder extends GFinder message += searchResults.getSize() + " subsequence matches found."; } - JvOptionPane.showInternalMessageDialog(this, message, null, - JvOptionPane.INFORMATION_MESSAGE); resIndex = -1; seqIndex = 0; + JvOptionPane.showInternalMessageDialog(this, message, null, + JvOptionPane.PLAIN_MESSAGE); } } - } /** @@ -377,4 +379,15 @@ public class Finder extends GFinder } return error; } + + protected void closeAction() + { + frame.setVisible(false); + frame.dispose(); + searchBox.persistCache(); + if (getFocusedViewport()) + { + ap.alignFrame.requestFocus(); + } + } }