X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FFinder.java;h=0e340dc79724996a9ed7e41e1d65b5faf0843a1d;hb=0452450533728e478ef8c893ea2cb3483c740fb3;hp=f3a0d454c59a93f9fc1559734df048f041dd8511;hpb=dbcfef03ad3d2853eda62c727978a160fc347f58;p=jalview.git

diff --git a/src/jalview/gui/Finder.java b/src/jalview/gui/Finder.java
index f3a0d45..0e340dc 100755
--- a/src/jalview/gui/Finder.java
+++ b/src/jalview/gui/Finder.java
@@ -172,7 +172,7 @@ public class Finder extends GFinder
         {
             int res = Integer.parseInt(searchString);
             found = true;
-            if (av.getSelectionGroup() == null || av.getSelectionGroup().getSize(false) < 1)
+            if (av.getSelectionGroup() == null || av.getSelectionGroup().getSize() < 1)
             {
               seq = (Sequence) av.getAlignment().getSequenceAt(0);
             }
@@ -195,7 +195,7 @@ public class Finder extends GFinder
 
         if (selection != null)
         {
-            if ((selection.getSize(false) < 1) ||
+            if ((selection.getSize() < 1) ||
                     ((selection.getEndRes() - selection.getStartRes()) < 2))
             {
                 selection = null;
@@ -206,7 +206,7 @@ public class Finder extends GFinder
         {
             seq = (Sequence) av.alignment.getSequenceAt(seqIndex);
 
-            if ((selection != null) && !selection.getSequences(false).contains(seq))
+            if ((selection != null) && !selection.getSequences(null).contains(seq))
             {
                 seqIndex++;
                 resIndex = 0;