X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FFinder.java;h=1c767a12ea76302ea04d525f8d796a5d1c301e39;hb=cf25e4f4f7d2cb2a7847a01d7cbe52003b46bf54;hp=b3fad97e370de200057c142eb101ce432960555e;hpb=eae01b09aadd51c1062c67fa66de5636f1854dd2;p=jalview.git
diff --git a/src/jalview/gui/Finder.java b/src/jalview/gui/Finder.java
index b3fad97..1c767a1 100755
--- a/src/jalview/gui/Finder.java
+++ b/src/jalview/gui/Finder.java
@@ -1,20 +1,19 @@
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)
- * Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
- * This program is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 2
- * of the License, or (at your option) any later version.
+ * This file is part of Jalview.
*
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU General Public License for more details.
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
*
- * You should have received a copy of the GNU General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License along with Jalview. If not, see .
*/
package jalview.gui;
@@ -51,14 +50,23 @@ public class Finder extends GFinder
* Creates a new Finder object.
*
* @param av
- * DOCUMENT ME!
+ * DOCUMENT ME!
* @param ap
- * DOCUMENT ME!
+ * DOCUMENT ME!
* @param f
- * DOCUMENT ME!
+ * DOCUMENT ME!
*/
public Finder()
{
+ this(null, null);
+ focusfixed = false;
+ }
+
+ public Finder(AlignViewport viewport, AlignmentPanel alignPanel)
+ {
+ av = viewport;
+ ap = alignPanel;
+ focusfixed = true;
frame = new JInternalFrame();
frame.setContentPane(this);
frame.setLayer(JLayeredPane.PALETTE_LAYER);
@@ -71,7 +79,7 @@ public class Finder extends GFinder
* DOCUMENT ME!
*
* @param e
- * DOCUMENT ME!
+ * DOCUMENT ME!
*/
public void findNext_actionPerformed(ActionEvent e)
{
@@ -85,7 +93,7 @@ public class Finder extends GFinder
* DOCUMENT ME!
*
* @param e
- * DOCUMENT ME!
+ * DOCUMENT ME!
*/
public void findAll_actionPerformed(ActionEvent e)
{
@@ -98,14 +106,33 @@ public class Finder extends GFinder
}
/**
- * gets the topmost alignment window and sets av and ap accordingly
+ * do we only search a given alignment view ?
+ */
+ private boolean focusfixed;
+
+ /**
+ * if !focusfixed and not in a desktop environment, checks that av and ap are
+ * valid. Otherwise, gets the topmost alignment window and sets av and ap
+ * accordingly
+ *
* @return false if no alignment window was found
*/
boolean getFocusedViewport()
{
- // now checks further down the window stack to fix bug https://mantis.lifesci.dundee.ac.uk/view.php?id=36008
+ if (focusfixed || Desktop.desktop == null)
+ {
+ if (ap != null && av != null)
+ {
+ return true;
+ }
+ // we aren't in a desktop environment, so give up now.
+ return false;
+ }
+ // now checks further down the window stack to fix bug
+ // https://mantis.lifesci.dundee.ac.uk/view.php?id=36008
JInternalFrame[] frames = Desktop.desktop.getAllFrames();
- for (int f=0;f 0))
{
- haveResults=true;
+ haveResults = true;
ap.idPanel.highlightSearchResults(idMatch);
- } else {
+ }
+ else
+ {
ap.idPanel.highlightSearchResults(null);
}
-
+
if (searchResults.getSize() > 0)
{
- haveResults=true;
+ haveResults = true;
createNewGroup.setEnabled(true);
}
else
@@ -215,8 +244,10 @@ public class Finder extends GFinder
if (findAll)
{
- String message = (idMatch.size()>0) ? ""+idMatch.size()+" IDs" : "";
- if (idMatch.size()>0 && searchResults.getSize()>0) {
+ String message = (idMatch.size() > 0) ? "" + idMatch.size() + " IDs"
+ : "";
+ if (idMatch.size() > 0 && searchResults.getSize() > 0)
+ {
message += " and ";
}
message += searchResults.getSize() + " subsequence matches found.";