X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FFinder.java;h=e5c94bd5b90e0e41d4ff3443695ad443706eb67f;hb=0039639a8b6fa7a9bfc131c83a493b5a696f0104;hp=5f683cb07bb4d82884537274c217ccea8934120f;hpb=f5c630601eccc201dd73f34227acf97f59a9168f;p=jalview.git

diff --git a/src/jalview/gui/Finder.java b/src/jalview/gui/Finder.java
index 5f683cb..e5c94bd 100755
--- a/src/jalview/gui/Finder.java
+++ b/src/jalview/gui/Finder.java
@@ -197,19 +197,18 @@ public class Finder extends GFinder
         {
             int res = Integer.parseInt(searchString);
             found = true;
-
-            if (av.getSelectionGroup().getSize() > 0)
+            if (av.getSelectionGroup() == null || av.getSelectionGroup().getSize() < 1)
             {
-                seq = (Sequence) (av.getSelectionGroup().getSequenceAt(0));
+              seq = (Sequence) av.getAlignment().getSequenceAt(0);
             }
             else
             {
-                seq = (Sequence) av.getAlignment().getSequenceAt(0);
+              seq = (Sequence) (av.getSelectionGroup().getSequenceAt(0));
             }
 
             searchResults.add(Integer.toString(av.getAlignment().findIndex(seq)));
-            searchResults.add(Integer.toString(seq.findIndex(res) - 1));
-            searchResults.add(Integer.toString(seq.findIndex(res) - 1));
+            searchResults.add(res+"");
+            searchResults.add(res+"");
         }
         catch (NumberFormatException ex)
         {