X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FFinder.java;h=f641f4b71d3968626a5b13baa30c4d650f6c6ea5;hb=4468c1e39c57fbb67192207b4c8750dab1b1dedd;hp=6dacbd85a27238db065e0c1137c2de51aa4d9979;hpb=daca035ea0a7379b3f5332aceb19bcb41f7038b3;p=jalview.git

diff --git a/src/jalview/gui/Finder.java b/src/jalview/gui/Finder.java
index 6dacbd8..f641f4b 100755
--- a/src/jalview/gui/Finder.java
+++ b/src/jalview/gui/Finder.java
@@ -75,7 +75,7 @@ public class Finder extends GFinder
 
   private AlignmentPanel ap;
 
-  private JInternalFrame frame;
+  private JalviewInternalFrame frame;
 
   /*
    * Finder agent per viewport searched
@@ -107,7 +107,8 @@ public class Finder extends GFinder
     ap = alignPanel;
     focusFixed = fixedFocus;
     finders = new HashMap<>();
-    frame = new JInternalFrame();
+    frame = new JalviewInternalFrame();
+    frame.setFrameIcon(null);
     frame.setContentPane(this);
     frame.setLayer(JLayeredPane.PALETTE_LAYER);
     frame.addInternalFrameListener(new InternalFrameAdapter()
@@ -260,28 +261,8 @@ public class Finder extends GFinder
     {
       return; // shouldn't happen
     }
-    List<SequenceI> seqs = new ArrayList<>();
-
-    String searchString = searchBox.getUserInput();
-    String desc = "Search Results";
-
-    /*
-     * assemble dataset sequences, and template new sequence features,
-     * for the amend features dialog
-     */
-    for (SearchResultMatchI match : searchResults.getResults())
-    {
-      SequenceI seq = match.getSequence();
-      while (seq.getDatasetSequence() != null)
-      {
-        seq = seq.getDatasetSequence();
-      }
-      seqs.add(seq.getSubSequence(seq.findIndex(match.getStart()),
-              seq.findIndex(match.getEnd()) + 1));
-    }
-    Desktop.jalviewClipboard = new Object[] {
-        seqs.toArray(new SequenceI[0]), ap.av.getAlignment().getDataset(),
-        ap.av.getAlignment().getHiddenColumns() };
+    // assume viewport controller has same searchResults as we do...
+    ap.alignFrame.avc.copyHighlightedRegionsToClipboard();
   }
 
   /**
@@ -314,6 +295,7 @@ public class Finder extends GFinder
       finder = new jalview.analysis.Finder(av);
       finders.put(av, finder);
     }
+    finder.setFeatureRenderer(ap.getFeatureRenderer());
 
     boolean isCaseSensitive = caseSensitive.isSelected();
     boolean doSearchDescription = searchDescription.isSelected();