X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FIdCanvas.java;h=2cb5bcdcdf1cf724ad97853162c568fc0c5f0669;hb=65d6d09cd08743d481d39521bb0298ea683888f8;hp=c89a9d5bfe00b45a041dd77216b5614c7e089813;hpb=4d7f98a6dd54d9863ba449ec79dcd95d25ed863d;p=jalview.git

diff --git a/src/jalview/gui/IdCanvas.java b/src/jalview/gui/IdCanvas.java
index c89a9d5..2cb5bcd 100755
--- a/src/jalview/gui/IdCanvas.java
+++ b/src/jalview/gui/IdCanvas.java
@@ -21,6 +21,7 @@
 package jalview.gui;
 
 import jalview.datamodel.SequenceI;
+import jalview.util.ColorUtils;
 
 import java.awt.BorderLayout;
 import java.awt.Color;
@@ -121,7 +122,7 @@ public class IdCanvas extends JPanel
     }
     else
     {
-      gg.setColor(av.getSequenceColour(s));
+      gg.setColor(ColorUtils.getColor(av.getSequenceColour(s)));
       gg.fillRect(0, ((i - starty) * charHeight) + ypos, getWidth(),
               charHeight);
       gg.setColor(Color.black);
@@ -204,6 +205,7 @@ public class IdCanvas extends JPanel
    * @param g
    *          DOCUMENT ME!
    */
+  @Override
   public void paintComponent(Graphics g)
   {
     g.setColor(Color.white);
@@ -382,7 +384,8 @@ public class IdCanvas extends JPanel
         }
         else
         {
-          currentColor = av.getSequenceColour(sequence);
+          currentColor = ColorUtils
+                  .getColor(av.getSequenceColour(sequence));
           currentTextColor = Color.black;
         }
 
@@ -479,7 +482,7 @@ public class IdCanvas extends JPanel
     Font bold = new Font(av.getFont().getName(), Font.BOLD, av.getFont()
             .getSize());
 
-    if (av.isHiddenRepSequence(seq))
+    if (av.isReferenceSeq(seq) || av.isHiddenRepSequence(seq))
     {
       gg.setFont(bold);
     }