X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FIdCanvas.java;h=37be8bc3e9a760a725a11733c3c24f4cbc07a9f6;hb=853624fb32058cccc544ae7d13af6ad4b0800b6c;hp=fe42e1e236fa16337bc97649fd130a01f99d190c;hpb=685909b39c1c85ff304ecea9763925de75b2cf77;p=jalview.git

diff --git a/src/jalview/gui/IdCanvas.java b/src/jalview/gui/IdCanvas.java
index fe42e1e..37be8bc 100755
--- a/src/jalview/gui/IdCanvas.java
+++ b/src/jalview/gui/IdCanvas.java
@@ -98,8 +98,7 @@ public class IdCanvas extends JPanel
    *          DOCUMENT ME!
    */
   public void drawIdString(Graphics2D gg, boolean hiddenRows, SequenceI s,
-          int i, int starty,
-          int ypos)
+          int i, int starty, int ypos)
   {
     int xPos = 0;
     int panelWidth = getWidth();
@@ -205,6 +204,7 @@ public class IdCanvas extends JPanel
    * @param g
    *          DOCUMENT ME!
    */
+  @Override
   public void paintComponent(Graphics g)
   {
     g.setColor(Color.white);
@@ -453,11 +453,9 @@ public class IdCanvas extends JPanel
     if (below)
     {
       gg.fillPolygon(
-              new int[]
-              { getWidth() - av.getCharHeight(),
-                  getWidth() - av.getCharHeight(),
-                  getWidth() }, new int[]
-              {
+              new int[] { getWidth() - av.getCharHeight(),
+                  getWidth() - av.getCharHeight(), getWidth() },
+              new int[] {
                   (i - starty) * av.getCharHeight() + yoffset,
                   (i - starty) * av.getCharHeight() + yoffset
                           + av.getCharHeight() / 4,
@@ -466,11 +464,9 @@ public class IdCanvas extends JPanel
     if (above)
     {
       gg.fillPolygon(
-              new int[]
-              { getWidth() - av.getCharHeight(),
-                  getWidth() - av.getCharHeight(),
-                  getWidth() }, new int[]
-              {
+              new int[] { getWidth() - av.getCharHeight(),
+                  getWidth() - av.getCharHeight(), getWidth() },
+              new int[] {
                   (i - starty + 1) * av.getCharHeight() + yoffset,
                   (i - starty + 1) * av.getCharHeight() + yoffset
                           - av.getCharHeight() / 4,
@@ -484,7 +480,7 @@ public class IdCanvas extends JPanel
     Font bold = new Font(av.getFont().getName(), Font.BOLD, av.getFont()
             .getSize());
 
-    if (av.isHiddenRepSequence(seq))
+    if (av.isReferenceSeq(seq) || av.isHiddenRepSequence(seq))
     {
       gg.setFont(bold);
     }