X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FIdCanvas.java;h=76020c716d79f4eec4df52b1eeeb23fde229dfb8;hb=bc1a3842b31a35a7794f4afec4911ad421c7c3e4;hp=0dde9b5490074b36bc25aab0f43d8cc5f4005924;hpb=baca3e1d25692175ab0d6e392427c0ff97534c37;p=jalview.git

diff --git a/src/jalview/gui/IdCanvas.java b/src/jalview/gui/IdCanvas.java
index 0dde9b5..76020c7 100755
--- a/src/jalview/gui/IdCanvas.java
+++ b/src/jalview/gui/IdCanvas.java
@@ -256,7 +256,7 @@ public class IdCanvas extends JPanel implements ViewportListenerI
     gg.fillRect(0, 0, getWidth(), imgHeight);
 
     drawIds(gg, av, av.getRanges().getStartSeq(),
-            av.getRanges().getEndSeq(), searchResults,true, getWidth());
+            av.getRanges().getEndSeq(), searchResults, true, getWidth());
 
     gg.dispose();
 
@@ -274,12 +274,16 @@ public class IdCanvas extends JPanel implements ViewportListenerI
    * @param startSeq
    * @param endSeq
    * @param selection
-   * @param forGUI when false rendering for print
-   * @param panelWidth width used to calculate righthand margin - usually idCanvas.getWidth()
+   * @param forGUI
+   *          when false rendering for print
+   * @param panelWidth
+   *          width used to calculate righthand margin - usually
+   *          idCanvas.getWidth()
    * 
    */
   void drawIds(Graphics2D g, AlignViewport alignViewport,
-          final int startSeq, final int endSeq, List<SequenceI> selection, boolean forGUI, int panelWidth)
+          final int startSeq, final int endSeq, List<SequenceI> selection,
+          boolean forGUI, int panelWidth)
   {
     Font font = alignViewport.getFont();
     if (alignViewport.isSeqNameItalics())
@@ -307,7 +311,8 @@ public class IdCanvas extends JPanel implements ViewportListenerI
 
     if (alignViewport.getWrapAlignment())
     {
-      drawIdsWrapped(g, alignViewport, startSeq, getHeight(), manuallyAdjusted ? panelWidth : -1,forGUI);
+      drawIdsWrapped(g, alignViewport, startSeq, getHeight(),
+              manuallyAdjusted ? panelWidth : -1, forGUI);
       return;
     }
 
@@ -390,15 +395,16 @@ public class IdCanvas extends JPanel implements ViewportListenerI
 
   /**
    * render sequence IDs and annotation labels when wrapped - without GUI junk
+   * 
    * @param g
    * @param av2
-   * @param i
+   * @param startSeq
    * @param totalHeight
    */
-  public void drawIdsWrappedNoGUI(Graphics2D g, AlignViewport av2, int i,
-          int totalHeight)
+  public void drawIdsWrappedNoGUI(Graphics2D g, AlignViewport av2,
+          int startSeq, int totalHeight)
   {
-    drawIdsWrapped(g, av2, totalHeight, totalHeight, i,false);
+    drawIdsWrapped(g, av2, startSeq, totalHeight, -1, false);
   }
 
   public void drawIdsWrapped(Graphics2D g, AlignViewport alignViewport,
@@ -419,7 +425,8 @@ public class IdCanvas extends JPanel implements ViewportListenerI
     if (alignViewport.isShowAnnotation())
     {
       // in wrapped mode, no alignPanel reference is available
-      // FIXME: make the renderer not create a new object in wrapped mode everytime!
+      // FIXME: make the renderer not create a new object in wrapped mode
+      // everytime!
       labels = new AnnotationLabels(alignViewport);
     }
 
@@ -455,10 +462,10 @@ public class IdCanvas extends JPanel implements ViewportListenerI
         int getWidth = getWidth();
         int thisIdWidth = getWidth;
         g.translate(0, ypos + (alheight * charHeight));
-        if (!manuallyAdjusted())
+        if (!isManuallyAdjusted())
         {
-          int getAnnotationsIdWidth = labels.drawLabels(g, false, -1, false,forGUI,
-                  null, false);
+          int getAnnotationsIdWidth = labels.drawLabels(g, false, -1, false,
+                  forGUI, null, false);
           thisIdWidth = idWidth < 0 ? getAnnotationsIdWidth : idWidth;
           if (thisIdWidth > getWidth)
           {
@@ -627,7 +634,7 @@ public class IdCanvas extends JPanel implements ViewportListenerI
 
   private boolean manuallyAdjusted = false;
 
-  public boolean manuallyAdjusted()
+  public boolean isManuallyAdjusted()
   {
     return manuallyAdjusted;
   }