X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FIdPanel.java;fp=src%2Fjalview%2Fgui%2FIdPanel.java;h=29bb52247df14fadd01ed893a8d3722e1d1399ea;hb=ffa5c07d90b4a933762a5d9faa0578c11693d63a;hp=6097089cda8951fc3c5fc7d849bfb90067d2fb39;hpb=962347ea6afb8dc4efb68ebc039f1c8bf62915e0;p=jalview.git

diff --git a/src/jalview/gui/IdPanel.java b/src/jalview/gui/IdPanel.java
index 6097089..29bb522 100755
--- a/src/jalview/gui/IdPanel.java
+++ b/src/jalview/gui/IdPanel.java
@@ -325,23 +325,19 @@ public class IdPanel extends JPanel implements MouseListener,
   {
     int seq2 = alignPanel.getSeqPanel().findSeq(e);
     Sequence sq = (Sequence) av.getAlignment().getSequenceAt(seq2);
-    // build a new links menu based on the current links + any non-positional
-    // features
+
+    /*
+     *  build a new links menu based on the current links
+     *  and any non-positional features
+     */
     List<String> nlinks = Preferences.sequenceUrlLinks.getLinksForMenu();
-    SequenceFeature sfs[] = sq == null ? null : sq.getSequenceFeatures();
-    if (sfs != null)
+    for (SequenceFeature sf : sq.getFeatures().getNonPositionalFeatures())
     {
-      for (SequenceFeature sf : sfs)
+      if (sf.links != null)
       {
-        if (sf.begin == sf.end && sf.begin == 0)
+        for (String link : sf.links)
         {
-          if (sf.links != null && sf.links.size() > 0)
-          {
-            for (int l = 0, lSize = sf.links.size(); l < lSize; l++)
-            {
-              nlinks.add(sf.links.elementAt(l));
-            }
-          }
+          nlinks.add(link);
         }
       }
     }