X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FIdPanel.java;h=1fd9e492dd7fa30acd753ed3420a41be44b21d52;hb=09d3b755d9b00f5c3acb44049aedd49361dc0690;hp=e29330ebe1246918a3e57de987b7c92befdad030;hpb=c3b91c81342d21498ffcb4639c3597a25aa2753c;p=jalview.git

diff --git a/src/jalview/gui/IdPanel.java b/src/jalview/gui/IdPanel.java
index e29330e..1fd9e49 100755
--- a/src/jalview/gui/IdPanel.java
+++ b/src/jalview/gui/IdPanel.java
@@ -373,8 +373,11 @@ public class IdPanel extends JPanel
      *  build a new links menu based on the current links
      *  and any non-positional features
      */
+    List<SequenceFeature> features = null;
+    if (sq != null)
+    {
     List<String> nlinks = Preferences.sequenceUrlLinks.getLinksForMenu();
-    List<SequenceFeature> features = sq.getFeatures().getNonPositionalFeatures();
+      features = sq.getFeatures().getNonPositionalFeatures();
     for (SequenceFeature sf : features)
     {
       if (sf.links != null)
@@ -382,6 +385,7 @@ public class IdPanel extends JPanel
         nlinks.addAll(sf.links);
       }
     }
+    }
 
     PopupMenu pop = new PopupMenu(alignPanel, sq, features,
             Preferences.getGroupURLLinks());
@@ -430,7 +434,7 @@ public class IdPanel extends JPanel
     lastid = seq;
 
     SequenceI pickedSeq = av.getAlignment().getSequenceAt(seq);
-    av.getSelectionGroup().addOrRemove(pickedSeq, true);
+    av.getSelectionGroup().addOrRemove(pickedSeq, false);
   }
 
   /**
@@ -465,7 +469,7 @@ public class IdPanel extends JPanel
     for (int i = start; i <= end; i++)
     {
       av.getSelectionGroup().addSequence(av.getAlignment().getSequenceAt(i),
-              i == end);
+              false);
     }
   }