X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FIdPanel.java;h=3c7e06fcb302fc6b66c9f30380823c50cad3a3c3;hb=36cb7e0a22de94370c4397d1d7feffcfe72a88fc;hp=f2761ab44e6b87a0fecf54e67b568e081418d132;hpb=fae86f8127622397f9df1e120c85546f1656a33b;p=jalview.git

diff --git a/src/jalview/gui/IdPanel.java b/src/jalview/gui/IdPanel.java
index f2761ab..3c7e06f 100755
--- a/src/jalview/gui/IdPanel.java
+++ b/src/jalview/gui/IdPanel.java
@@ -108,8 +108,7 @@ public class IdPanel extends JPanel
       SequenceI sequence = av.getAlignment().getSequenceAt(seq);
       StringBuilder tip = new StringBuilder(64);
       seqAnnotReport.createTooltipAnnotationReport(tip, sequence,
-              av.isShowDBRefs(), av.isShowNPFeats(),
-              sp.seqCanvas.fr.getMinMax());
+              av.isShowDBRefs(), av.isShowNPFeats(), sp.seqCanvas.fr);
       setToolTipText(JvSwingUtils.wrapTooltip(true,
               sequence.getDisplayId(true) + " " + tip.toString()));
     }
@@ -332,7 +331,8 @@ public class IdPanel extends JPanel
      *  and any non-positional features
      */
     List<String> nlinks = Preferences.sequenceUrlLinks.getLinksForMenu();
-    for (SequenceFeature sf : sq.getFeatures().getNonPositionalFeatures())
+    List<SequenceFeature> features = sq.getFeatures().getNonPositionalFeatures();
+    for (SequenceFeature sf : features)
     {
       if (sf.links != null)
       {
@@ -343,7 +343,7 @@ public class IdPanel extends JPanel
       }
     }
 
-    PopupMenu pop = new PopupMenu(alignPanel, sq, nlinks,
+    PopupMenu pop = new PopupMenu(alignPanel, sq, features,
             Preferences.getGroupURLLinks());
     pop.show(this, e.getX(), e.getY());
   }
@@ -430,10 +430,11 @@ public class IdPanel extends JPanel
    */
   public void highlightSearchResults(List<SequenceI> list)
   {
-    getIdCanvas().setHighlighted(list);
+    av.setHighlightedSeqs(list);
 
     if (list == null)
     {
+      idCanvas.repaint();
       return;
     }
 
@@ -445,6 +446,11 @@ public class IdPanel extends JPanel
     {
       av.getRanges().setStartSeq(index);
     }
+    else
+    {
+      // just repaint
+      idCanvas.repaint();
+    }
   }
 
   public IdCanvas getIdCanvas()