X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FIdPanel.java;h=6b1109a3e78a45f6378705e6d3784167c13d603b;hb=6752a167ac486ce6edb2ac0314618e2072f29cd3;hp=7a2ecf769c989a0f7f4167efea398fffc39e586b;hpb=48b925b3dd950c86b1add0f2a90a2d0f8b6e316e;p=jalview.git
diff --git a/src/jalview/gui/IdPanel.java b/src/jalview/gui/IdPanel.java
index 7a2ecf7..6b1109a 100755
--- a/src/jalview/gui/IdPanel.java
+++ b/src/jalview/gui/IdPanel.java
@@ -1,36 +1,51 @@
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
- * Copyright (C) 2011 J Procter, AM Waterhouse, J Engelhardt, LM Lui, G Barton, M Clamp, S Searle
- *
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Copyright (C) 2014 The Jalview Authors
+ *
* This file is part of Jalview.
- *
+ *
* Jalview is free software: you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
- *
- * Jalview is distributed in the hope that it will be useful, but
- * WITHOUT ANY WARRANTY; without even the implied warranty
- * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
* PURPOSE. See the GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License along with Jalview. If not, see .
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see .
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
*/
package jalview.gui;
-import java.awt.*;
-import java.awt.event.*;
+import jalview.datamodel.Sequence;
+import jalview.datamodel.SequenceFeature;
+import jalview.datamodel.SequenceGroup;
+import jalview.datamodel.SequenceI;
+import jalview.io.SequenceAnnotationReport;
+import jalview.util.MessageManager;
+import jalview.util.UrlLink;
+
+import java.awt.BorderLayout;
+import java.awt.event.MouseEvent;
+import java.awt.event.MouseListener;
+import java.awt.event.MouseMotionListener;
+import java.awt.event.MouseWheelEvent;
+import java.awt.event.MouseWheelListener;
import java.util.List;
import java.util.Vector;
-import javax.swing.*;
-
-import jalview.datamodel.*;
-import jalview.io.SequenceAnnotationReport;
-import jalview.util.UrlLink;
+import javax.swing.JOptionPane;
+import javax.swing.JPanel;
+import javax.swing.SwingUtilities;
+import javax.swing.ToolTipManager;
/**
- * DOCUMENT ME!
- *
+ * This panel hosts alignment sequence ids and responds to mouse clicks on them,
+ * as well as highlighting ids matched by a search from the Find menu.
+ *
* @author $author$
* @version $Revision$
*/
@@ -53,15 +68,14 @@ public class IdPanel extends JPanel implements MouseListener,
int lastid = -1;
boolean mouseDragging = false;
+
private final SequenceAnnotationReport seqAnnotReport;
/**
* Creates a new IdPanel object.
- *
+ *
* @param av
- * DOCUMENT ME!
* @param parent
- * DOCUMENT ME!
*/
public IdPanel(AlignViewport av, AlignmentPanel parent)
{
@@ -77,9 +91,11 @@ public class IdPanel extends JPanel implements MouseListener,
addMouseWheelListener(this);
ToolTipManager.sharedInstance().registerComponent(this);
}
+
/**
- * DOCUMENT ME!
- *
+ * Respond to mouse movement by constructing tooltip text for the sequence id
+ * under the mouse.
+ *
* @param e
* DOCUMENT ME!
*/
@@ -91,20 +107,21 @@ public class IdPanel extends JPanel implements MouseListener,
if (seq > -1 && seq < av.getAlignment().getHeight())
{
SequenceI sequence = av.getAlignment().getSequenceAt(seq);
- StringBuffer tip = new StringBuffer();
- seqAnnotReport.createSequenceAnnotationReport(tip, sequence,
- av.isShowDbRefs(), av.isShowNpFeats(),
- sp.seqCanvas.fr.minmax);
+ StringBuffer tip = new StringBuffer(64);
+ seqAnnotReport
+ .createSequenceAnnotationReport(tip, sequence,
+ av.isShowDbRefs(), av.isShowNpFeats(),
+ sp.seqCanvas.fr.minmax);
setToolTipText("" + sequence.getDisplayId(true) + " "
- + tip.toString()+"");
+ + tip.toString() + "