X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FJalview2XML.java;fp=src%2Fjalview%2Fgui%2FJalview2XML.java;h=158ae509dc1667065990448a8bfefc0b23295d28;hb=227ee1c1c69c228b67d408a0a83ae51bf5811272;hp=b608b9502fcd41dc8e4b57c94a7eebb264f8dbfe;hpb=68c26e8852772be21fdb5b091fa9083d8cdb6eec;p=jalview.git

diff --git a/src/jalview/gui/Jalview2XML.java b/src/jalview/gui/Jalview2XML.java
index b608b95..158ae50 100644
--- a/src/jalview/gui/Jalview2XML.java
+++ b/src/jalview/gui/Jalview2XML.java
@@ -1145,7 +1145,7 @@ public class Jalview2XML
       view.setFollowHighlight(av.followHighlight);
       view.setFollowSelection(av.followSelection);
       view.setIgnoreGapsinConsensus(av.getIgnoreGapsConsensus());
-      if (av.featuresDisplayed != null)
+      if (av.getFeaturesDisplayed() != null)
       {
         jalview.schemabinding.version2.FeatureSettings fs = new jalview.schemabinding.version2.FeatureSettings();
 
@@ -1180,7 +1180,7 @@ public class Jalview2XML
                       .getColour(renderOrder[ro]).getRGB());
             }
 
-            setting.setDisplay(av.featuresDisplayed
+            setting.setDisplay(av.getFeaturesDisplayed()
                     .containsKey(renderOrder[ro]));
             float rorder = ap.seqPanel.seqCanvas.getFeatureRenderer()
                     .getOrder(renderOrder[ro]);
@@ -3604,7 +3604,7 @@ public class Jalview2XML
     // recover featre settings
     if (jms.getFeatureSettings() != null)
     {
-      af.viewport.featuresDisplayed = new Hashtable();
+      af.viewport.setFeaturesDisplayed(new Hashtable());
       String[] renderOrder = new String[jms.getFeatureSettings()
               .getSettingCount()];
       for (int fs = 0; fs < jms.getFeatureSettings().getSettingCount(); fs++)
@@ -3656,7 +3656,7 @@ public class Jalview2XML
         }
         if (setting.getDisplay())
         {
-          af.viewport.featuresDisplayed.put(setting.getType(), new Integer(
+          af.viewport.getFeaturesDisplayed().put(setting.getType(), new Integer(
                   setting.getColour()));
         }
       }