X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FJalview2XML.java;h=0c31a2a007adcac04d169c2dd035da558362d7ee;hb=1d0f5219658cdf6ad5e1a1cbe6e1bb8cd12e6d85;hp=9285754c7ca911a86ff54cbd9a4f3d816dcbcda1;hpb=948bd3bcbacc509da0cefaae3eedd97300a6ccce;p=jalview.git

diff --git a/src/jalview/gui/Jalview2XML.java b/src/jalview/gui/Jalview2XML.java
index 9285754..0c31a2a 100644
--- a/src/jalview/gui/Jalview2XML.java
+++ b/src/jalview/gui/Jalview2XML.java
@@ -4553,7 +4553,8 @@ public class Jalview2XML
       }
       else
       {
-        cs = ColourSchemeProperty.getColourScheme(al, view.getBgColour());
+        cs = ColourSchemeProperty.getColourScheme(af.viewport, al,
+                view.getBgColour());
       }
     }
 
@@ -4893,7 +4894,7 @@ public class Jalview2XML
     else
     {
       cs = new AnnotationColourGradient(matchedAnnotation,
-              ColourSchemeProperty.getColourScheme(al,
+              ColourSchemeProperty.getColourScheme(af.viewport, al,
                       viewAnnColour.getColourScheme()),
               viewAnnColour.getAboveThreshold());
     }