X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FJalview2XML.java;h=3ac453fe3e3fe84011a2ce368627fa487bf77a16;hb=01f25e260a8c336119462420a1c2a11512293b41;hp=83936936a7cf3acacf635e012b697b9f569f759f;hpb=fd7eebe6dcf2346692d718ef91bb468cc12ebf44;p=jalview.git

diff --git a/src/jalview/gui/Jalview2XML.java b/src/jalview/gui/Jalview2XML.java
index 8393693..3ac453f 100644
--- a/src/jalview/gui/Jalview2XML.java
+++ b/src/jalview/gui/Jalview2XML.java
@@ -39,6 +39,7 @@ import jalview.ext.varna.RnaModel;
 import jalview.gui.StructureViewer.ViewerType;
 import jalview.io.DataSourceType;
 import jalview.io.FileFormat;
+import jalview.renderer.ResidueShaderI;
 import jalview.schemabinding.version2.AlcodMap;
 import jalview.schemabinding.version2.AlcodonFrame;
 import jalview.schemabinding.version2.Annotation;
@@ -73,7 +74,6 @@ import jalview.schemabinding.version2.Tree;
 import jalview.schemabinding.version2.UserColours;
 import jalview.schemabinding.version2.Viewport;
 import jalview.schemes.AnnotationColourGradient;
-import jalview.schemes.CollectionColourSchemeI;
 import jalview.schemes.ColourSchemeI;
 import jalview.schemes.ColourSchemeProperty;
 import jalview.schemes.FeatureColour;
@@ -1178,7 +1178,7 @@ public class Jalview2XML
         ColourSchemeI colourScheme = sg.getColourScheme();
         if (colourScheme != null)
         {
-          CollectionColourSchemeI groupColourScheme = sg
+          ResidueShaderI groupColourScheme = sg
                   .getGroupColourScheme();
           if (groupColourScheme.conservationApplied())
           {
@@ -1294,7 +1294,7 @@ public class Jalview2XML
                 .getGlobalColourScheme()));
       }
 
-      CollectionColourSchemeI vcs = av.getViewportColourScheme();
+      ResidueShaderI vcs = av.getResidueShading();
       ColourSchemeI cs = av.getGlobalColourScheme();
 
       if (cs != null)
@@ -4474,15 +4474,15 @@ public class Jalview2XML
     }
 
     af.viewport.setGlobalColourScheme(cs);
-    af.viewport.getViewportColourScheme().setThreshold(
+    af.viewport.getResidueShading().setThreshold(
             view.getPidThreshold(), true);
-    af.viewport.getViewportColourScheme().setConsensus(
+    af.viewport.getResidueShading().setConsensus(
             af.viewport.getSequenceConsensusHash());
     af.viewport.setColourAppliesToAllGroups(false);
 
     if (view.getConservationSelected() && cs != null)
     {
-      af.viewport.getViewportColourScheme().setConservationInc(
+      af.viewport.getResidueShading().setConservationInc(
               view.getConsThreshold());
     }